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Changing coordinate system #29

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Hoileong89 opened this issue Apr 3, 2018 · 2 comments
Open

Changing coordinate system #29

Hoileong89 opened this issue Apr 3, 2018 · 2 comments

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@Hoileong89
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How could I change the coordinate system from PTK coordinates to DICOM coordinates (based on your tutorial 2? Could I change it from the GUI?
@Hoileong89
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Hoileong89 commented Apr 4, 2018 •
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I got the segmentation output and exported it in Nifti format from PTK. But when I overlaid it on the original image in ITKSnap, the segmentation output was not matched with the original image (the left lung was with the right lung segmentation). I was wondering if this is because of the coordinate system difference between PTK and ITKSnap. How could I possibly solve this?

@mollymolla
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I need to change the coordinate system in DICOM coordinates too. Did you manage to changing them?

How could I change the coordinate system from PTK coordinates to DICOM coordinates (based on your tutorial 2? Could I change it from the GUI?

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@Hoileong89 @mollymolla