circuit_simulation_config.json

{
  "manifest": {
    "$BASE_DIR": "${configdir}",
    "$NETWORK_DIR": "$BASE_DIR/network_homogenous",
    "$COMPONENTS_DIR": "$BASE_DIR/components_homogenous"
  },
  "components": {
    "biophysical_neuron_models_dir": "$COMPONENTS_DIR/biophysical_neuron_models",
    "mechanisms_dir": "$COMPONENTS_DIR/mechanisms",
    "morphologies_dir": "$COMPONENTS_DIR/morphologies",
    "point_neuron_models_dir": "$COMPONENTS_DIR/point_neuron_models",
    "synaptic_models_dir": "$COMPONENTS_DIR/synaptic_models",
    "templates_dir": "$COMPONENTS_DIR/templates",
    "filter_models_dir": "$COMPONENTS_DIR/filter_models"
  },
  "networks": {
    "nodes": [
      {
        "nodes_file": "$NETWORK_DIR/BLA_nodes.h5",
        "node_types_file": "$NETWORK_DIR/BLA_node_types.csv"
      },
      {
        "nodes_file": "$NETWORK_DIR/vpsi_inh_nodes.h5",
        "node_types_file": "$NETWORK_DIR/vpsi_inh_node_types.csv"
      },
      {
        "nodes_file": "$NETWORK_DIR/thalamus_pyr_nodes.h5",
        "node_types_file": "$NETWORK_DIR/thalamus_pyr_node_types.csv"
      },
      {
        "nodes_file": "$NETWORK_DIR/thalamus_pv_nodes.h5",
        "node_types_file": "$NETWORK_DIR/thalamus_pv_node_types.csv"
      },
      {
        "nodes_file": "$NETWORK_DIR/thalamus_som_nodes.h5",
        "node_types_file": "$NETWORK_DIR/thalamus_som_node_types.csv"
      },
      {
        "nodes_file": "$NETWORK_DIR/thalamus_cr_nodes.h5",
        "node_types_file": "$NETWORK_DIR/thalamus_cr_node_types.csv"
      }
    ],
    "edges": [
      {
        "edge_types_file": "$NETWORK_DIR/thalamus_pv_BLA_edge_types.csv",
        "edges_file": "$NETWORK_DIR/thalamus_pv_BLA_edges.h5"
      },
      {
        "edge_types_file": "$NETWORK_DIR/thalamus_som_BLA_edge_types.csv",
        "edges_file": "$NETWORK_DIR/thalamus_som_BLA_edges.h5"
      },
      {
        "edge_types_file": "$NETWORK_DIR/thalamus_pyr_BLA_edge_types.csv",
        "edges_file": "$NETWORK_DIR/thalamus_pyr_BLA_edges.h5"
      },
      {
        "edge_types_file": "$NETWORK_DIR/BLA_BLA_edge_types.csv",
        "edges_file": "$NETWORK_DIR/BLA_BLA_edges.h5"
      },
      {
        "edge_types_file": "$NETWORK_DIR/thalamus_cr_BLA_edge_types.csv",
        "edges_file": "$NETWORK_DIR/thalamus_cr_BLA_edges.h5"
      },
      {
        "edge_types_file": "$NETWORK_DIR/vpsi_inh_BLA_edge_types.csv",
        "edges_file": "$NETWORK_DIR/vpsi_inh_BLA_edges.h5"
      }
    ],
    "gap_juncs": []
  }
}