Gemfile

source "http://rubygems.org"
# Add dependencies required to use your gem here.
# Example:
#   gem "activesupport", ">= 2.3.5"
gem 'bio-ipcress'
gem 'bio-logger'
gem 'bio'
gem 'progressbar'
gem 'bio-samtools'
gem 'ruby-graphviz'
gem 'ds'
gem 'hopcsv', '~> 0.4'
gem 'bio-velvet', '~>0.6'
gem 'bio-velvet_underground', '~>0.3'
gem 'ruby-progressbar'
gem 'yargraph', '~>0.0.4'

#only needed temporarily until the bio-velvet gem is a proper dependency
gem 'files'

# Add dependencies to develop your gem here.
# Include everything needed to run rake, tests, features, etc.
group :development do
  gem "rspec", ">= 2.8.0"
  gem "yard", ">= 0.7"
  gem "rdoc", ">= 3.12"
  gem "bundler", ">= 1.0.0"
  gem 'jeweler'
  gem 'bio-commandeer'
  gem 'pry'
end