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build_environments.yml
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name: Build environments
on: [push, pull_request]
jobs:
Build-environments:
runs-on: ubuntu-latest
strategy:
matrix:
environments:
[
"jupyter-book/introduction/analysis_tools.yml",
"jupyter-book/preprocessing_visualization/preprocessing.yml",
"jupyter-book/cellular_structure/clustering.yml",
"jupyter-book/cellular_structure/annotation.yml",
"jupyter-book/cellular_structure/integration.yml",
"jupyter-book/conditions/compositional.yml",
"jupyter-book/conditions/gsea_pathway.yml",
"jupyter-book/conditions/perturbation_modeling.yml",
"jupyter-book/conditions/differential_gene_expression.yml",
"jupyter-book/trajectories/lineage_tracing.yml",
"jupyter-book/trajectories/pseudotemporal.yml",
"jupyter-book/mechanisms/cell_cell_communication.yml",
"jupyter-book/spatial/spatial.yml",
"jupyter-book/surface_protein/surface_protein.yml",
"jupyter-book/multimodal_integration/paired_integration.yml",
"jupyter-book/multimodal_integration/advanced_integration.yml",
]
steps:
- uses: actions/checkout@v3
- name: Install Conda environment with Micromamba
uses: mamba-org/provision-with-micromamba@main
with:
channel-priority: disabled
cache-downloads: true
environment-file: ${{ matrix.environments }}
environment-name: currentenv