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Enhancing KM plot data depth and functionality #742

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mhaist94 opened this issue Jun 1, 2024 · 2 comments
Open

Enhancing KM plot data depth and functionality #742

mhaist94 opened this issue Jun 1, 2024 · 2 comments
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enhancement New feature or request

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@mhaist94
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mhaist94 commented Jun 1, 2024

Description of feature

Hi all,

thanks for all the previous help on the ehrapy features - you´re a great team!
I have a couple of ideas that might help to enhance the visibility of ehrapy particularly for clinicians / clinician scientists (which could have a big impact on the progress in the field given that most clinicians still use old stat tech like spss or sas).
To keep things in order I will open up a new issue for each of those ideas (stop me if this might not be useful!).
One of those (which is probably an easy fix, but with making a big difference) is enhancing the data density within the KM plots (in order for clinicians to use ehrapy there´s a couple of features that have to be shown in such a KM plot) by adding the following:

  • No at risk table
  • Censors
  • results of log-rank test as p-value plotted within the KM figure
  • median survival highlighted

As I grew up mostly working with R I unfortunately dont have a python env at hand that implements all these features but can provide you the corresponding R-package (survminer, see https://rpkgs.datanovia.com/survminer/ or a general example in Figure 2A of this publication: https://jitc.bmj.com/content/11/9/e007630)

Let me know if this is somehow helpful or if you have any questions.
Thanks all!

@mhaist94 mhaist94 added the enhancement New feature or request label Jun 1, 2024
@Zethson
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Zethson commented Jun 1, 2024

These ideas are great! Thank you very much, please keep them coming.

@eroell
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eroell commented Nov 13, 2024

This here could be helpful @aGuyLearning : https://www.nature.com/articles/s41586-024-08167-5

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