diff --git a/FastK.c b/FastK.c index fcdc92c..2b3892b 100644 --- a/FastK.c +++ b/FastK.c @@ -31,8 +31,8 @@ int DO_STAGE; // Which step to perform #endif -static char *Usage[] = { "[-k] -t[]] [-p[:[.ktab]]] [-c] [-bc]", - " [-v] [-N] [-P] [-M] [-T]", +static char *Usage[] = { "[-k] [-t[]] [-p[:
[.ktab]]] [-c] [-bc]", + "[-v] [-N] [-P] [-M] [-T]", " [.cram|.[bs]am|.db|.dam|.f[ast][aq][.gz] ..." }; @@ -363,7 +363,7 @@ int main(int argc, char *argv[]) { cpath = getcwd(NULL,0); if (SORT_PATH[0] == '.') { if (SORT_PATH[1] == '/') - spath = Catenate(cpath,SORT_PATH+1,"",""); + spath = Catenate(cpath,SORT_PATH+2,"",""); else if (SORT_PATH[1] == '\0') spath = cpath; else diff --git a/README.md b/README.md index 7b072de..3bc8795 100644 --- a/README.md +++ b/README.md @@ -64,7 +64,7 @@ about 4.7-bits per base for a recent 50X HiFi asssembly data set. ``` 1. FastK [-k] [-t[]] [-p[:
[.ktab]]] [-c] [-bc] - [-v] [-N] [-P] [-M] [-T] + [-v] [-N] [-P] [-M] [-T] [.cram|.[bs]am|.db|.dam|.f[ast][aq][.gz]] ... ```