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24.2.2 (September 14, 2024)

Patch release containing one bugfix and updating the default skeleton.

  • FIX: Avoid directory clobber during zip extraction (#131)
  • MAINT: Overdue updates and revision of CircleCI (#136)

24.2.1 (September 13, 2024; RECALLED)

Release recalled because it was uploaded in a stale status of the client.

24.2.0 (March 18, 2024)

Minor release including a new command line interface for the Client.

  • ENH: Add a command line interface (#123)
  • MAINT: Update DataLad's pinned version (#128)
  • MAINT: Revise failing Pypi deployment and twine check (#127)
  • MAINT: Generate a requirements file with test dependencies (#125)
  • MAINT: Add codespell and make it fix some typos (#121)
  • MAINT: Revise code style according to ruff (#124)
  • MAINT: Add license header in all Python files (#122)
  • MAINT: Migrate to hatchling packaging (#120)
  • MAINT: Run ruff and address some issues (#119)
  • MAINT: Finalize migration of package build to PEP517/8 (#117)

24.1.0 (March 15, 2024)

Minor release updating PyBIDS's configuration to enable new entities that allow the selection of recently added FreeSurfer's surface parcellations in templateflow/tpl-fsaverage#5.

  • ENH: Add seg-<label> and scale-<number> entities (#114)

24.0.0 (March 4, 2024)

Minor release to update skeleton to include recently added templates.

  • CI: Add manual trigger, bump action versions (#113)

23.1.0 (October 12, 2023)

Minor release including support for Python 3.12.

Python 3.7 support has been removed.

  • FIX: Use Path.as_posix() and f-strings to build correct URLs on Windows (#107)
  • MNT: Python 3.12 support, drop Python 3.7 and pkg_resources (#109)

23.0.0 (February 2, 2023)

Minor release including additional API features and an updated skeleton.

  • FIX: Preempt BIDSLayout from indexing dot-folders (#99)
  • ENH: Make sure existing layout.get_* are not bubbled in (#102)
  • ENH: Allow access to PyBIDS' magic get_* (#101)
  • ENH: Add an api.ls() function to list (without getting) files (#97)
  • MAINT: Discontinue legacy docker runners of CircleCI (#104)
  • MAINT: Rotate CircleCI secrets and setup up org-level context (#103)
  • MAINT: Fix docs build environment in CircleCI (#96)

0.8.1 (May 7, 2022)

Patch release updating the S3 skeleton to include the fixed version of tpl-MouseIn.

0.8.0 (March 31, 2022)

Minor release including the feedback received through peer-review of the preprint. Please note that this release is supported by Python +3.7.

  • FIX: Normalize extensions for leading dot & update doctests to new resources (#92)
  • ENH: Add a wipe() utility to clear up the cache (#91)
  • DOC: Update notebooks submodule (#94)
  • MAINT: Drop Python 3.6 (#93)

0.7.2 (November 16, 2021)

Patch release with a substantially documentation update, as well as usage improvements. Additionally, new surface meshes were added for the fsLR template.

  • DOC: Substantial update and re-structuring to the documentation (#77) (#79)
  • FIX: layout is None when PyBIDS not correctly installed (#72)
  • FIX: Drop doi2bib and query doi.org directly (#76)
  • MAINT: Pin setuptools >=45, new dependency as of setuptools_scm>=6.0.1 (#73)

0.7.1 (December 9, 2020)

Patch release with improvements to the template fetching experience. With thanks to Lea Waller for the contribution.

  • FIX: Use BIDSLayoutIndexer when initiating BIDSLayout (#61)
  • FIX: Display correct units when downloading templates (#63)
  • FIX: GitHub Actions build (#64)
  • ENH: Add option to raise exception on empty get queries (#57)
  • ENH: Ensure templates layout is re-indexed when updated (#59)

0.7.0 - Withdrawn

Release 0.7.0 was withdrawn because of inconsistencies in deployment.

0.6.3 (July 06, 2020)

Patch release including an updated PyBIDS configuration file for the PyBIDS 0.11.x series.

  • FIX: Include leading dots in extensions (#56)

0.6.2 (May 09, 2020)

Patch release including some minimal improvements to package building and CI.

  • MAINT: Some additional distribution improvements (#51)

0.6.1 (May 09, 2020)

Patch release to generate and distribute wheels.

  • MAINT: Run black (#50)
  • MAINT: Distribute wheel + Revise CI framework (#49)

0.6.0 (May 1st, 2020)

Minor release in preparation of a new CalVer versioning following the lead of fMRIPrep. This release contains a fair amount of maintenance work to ensure synchronicity with the TemplateFlow Archive (https://github.com/templateflow/templateflow). These maintenance actions drive the development towards establishing a peer-reviewed, lightweight template submission protocol. The release includes an update mechanism, enabling users of the S3-backed mode of operation (default) to update their local Archive structure without reinstalling the client. This feature is enabled by default on import time, to disable it make sure you export TEMPLATEFLOW_AUTOUPDATE=off. With thanks to Yarik for a datalad-related bug-fix. With thanks to V. Fonov for contributing with the new tpl-MNI152NLin2009cSym.

  • FIX: Provide path to the dataset as dataset argument (#48)
  • ENH: Run an automatic S3-skeleton update on import by default (#45)
  • ENH: Update the internal index of TemplateFlow (#40)
  • ENH: Automatic generation of template citations (#35)
  • MAINT: Set-up a GitHub action to test installation alternatives (see #23).
  • MAINT: Migrate to setuptools_scm (#42)
  • MAINT: Run black on the whole tree (#41)
  • MAINT: Transfer the burden of keeping the S3-skeleton updated over to the archive (#39)

0.5.2 (March 20, 2020)

Patch release in the 0.5 series, adding a soft brainmask for numerical stability in floating-point rounding of atlas-based brain-extraction methods using the MNI152NLin2009cAsym template.

0.5.1 (March 20, 2020)

Patch of the new 0.5.x series, including a new rodent template and file fixes for fsaverage and fsLR templates. With thanks to E. MacNicol for contributing the new tpl-WHS.

  • MAINT: Drop Python 3.5 (#36)

0.5.0 (March 12, 2020)

This release has been removed and should not be used.

Version 0.4.2 (January 28, 2020)

Patch release including a bugfix, adding a DataLad pin, and making PyBIDS pin more flexible.

  • MAINT: Update PyBIDS pin and DataLad pin
  • FIX: Density key (#31)

Version 0.4.1 (July 22, 2019)

First release after a deep revision of the tests and the continuous integration setup. Also includes minor reliability improvements over the previous release and some bugfixes.

  • MAINT: Testing Automatically update CHANGES after merge (51988f8) (#27)
  • MAINT: Enable code coverage collection (#25)
  • MAINT: Switch to a setup.cfg-style of installation (#24)
  • FIX: Check and update $HOME if needed with every installation (#20)
  • FIX: Do not merge branches into master when pushing back skell (#19)
  • FIX: Commit newly generated S3 skeletons back to repo (#17)
  • FIX: Add extension entity for selection (#16) @effigies

Version 0.4.0 (July 9, 2019)

  • MAINT: Use PyBIDS 0.9.x (#15) @effigies

Version 0.3.0 (June 4, 2019)

  • ENH: Add MNIInfant template.

Version 0.2.0 (June 4, 2019)

  • ENH: Added MNIPediatricAsym template.
  • ENH: Updated spec to allow several cohorts (cohort-).

Version 0.1.9 (May 28, 2019)

  • ENH: Added the Schaefer 2018 atlas) to MNI152NLin6Asym.
  • ENH: Mapped the Schaefer atlas and the Harvard-Oxford atlas into MNI152NLin2009cAsym.

Version 0.1.8 (May 9, 2019)

  • ENH: Added FSL's Harvard-Oxford template to MNI152NLin6Asym.

Version 0.1.7 (April 3, 2019)

Version 0.1.6 (March 29, 2019)

  • ENH: Finish adding MNI152NLin6Sym after curation of NIfTI volumes and exporting to S3.

Version 0.1.5 (March 29, 2019)

  • ENH: Add volumetric data to the fsLR template.
  • ENH: Rename the segmentation of subcortical structures to be consistent with the new files.

Version 0.1.4 (March 28, 2019)

  • ENH: New release to include the new MNI152NLin6Asym template (the default MNI template of FSL).

Version 0.1.3 (March 14, 2019)

  • FIX: Update TemplateFlow skeleton to include tpl-fsaverage/tpl-fsaverage_dseg.tsv, after TemplateFlow update.

Version 0.1.2 (March 12, 2019)

  • FIX: api.get - robuster fetcher algorithm (allows S3 download on DL repos) and better error messages (#10)

Version 0.1.1 (March 12, 2019)

  • FIX: Require environment variable to use DataLad (#8)

Version 0.1.0.post1 (March 05, 2019)

  • ENH: Testing a better .zenodo.json settings.

Version 0.1.0 (March 05, 2019)

  • ENH: First minimally functional TemplateFlow client release.

Version 0.0.5.post1 (March 04, 2019)

Hotfix release to retrieve correct version when pip installed.

  • MAINT: Add a .zenodo.json file.

Version 0.0.5 (March 04, 2019)

  • ENH: Datalad-free alternative for TemplateFlow (#7)
  • ENH: Use a BIDSLayout to index TemplateFlow (#6)

Version 0.0.4 (January 18, 2019)

  • ENH: Add a get_metadata utility

Version 0.0.3 (January 16, 2019)

  • ENH: Add api.templates() + one doctest

Version 0.0.2 (January 16, 2019)

  • ENH: Add one doctest

Version 0.0.1 (January 16, 2019)

  • ENH: First functional release