[FEAT]: Create a logfile of all commands sent during script execution

[nfelt14]

Description

It would be really nice if there was a file saved with the contents of the stdout that could be used to view all commands sent during the script execution.

Additional Information

This should be implemented using the logging module of Python and should probably replace the current prints used to provide stdout.

[nfelt14]

When working on this, be sure to search the code for links to this issue. There are a few places where changes will be needed that are marked with a link to this issue.