R Course 2019

R course made for the Red Sea Research Center (RSCR) of KAUST in January 2019. This course assume no previous experience in programming.

Software covered:

R (v3.5)
Rstudio

Instructors

Tamara Huete Stauffer [email protected]
Grégoire Michoud [email protected]
Daffne López-Sandoval [email protected]

Syllabus

Day 1: R Introduction

Why R
RStudio
First steps
R markdown
Base plots
Color

Day 2: Basic and Advanced Plots

Scatterplots
Boxplots
Barplots
ggplot2
Labels
Date-time conversions
Exercise : Section plots

Day 3: Statistics

T-test
ANOVA
Regressions
Correlations

Day 4: Reproduceable workflow (example Diversity data)

Sequencing depth
Alpha diversity
Beta diversity (NMDS and CCA)
Relative abundance

Day 5. Useful packages

Package marmap
Package plot3D
Package OCE
Package tidyverse
Package phyloseq