neuriteScan

An R Package for neurite image analysis. neuriteScan quantifies neurite density and other significant measures for experiments in Neuroscience area of research.

Dependencies

neuriteScan uses functions from R Package EBImage and Python modules skimage and numpy via R Package reticulate.

• Install R Package EBImage

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBImage")

• Install R Package reticulate

install.packages("reticulate")
library(reticulate)
py_install("numpy")
py_install("skimage")
py_install("skimage.restoration")

Instalation

Install neuriteScan from github

if (! requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("sysbiolab/neuriteScan")