Correct annotated layout for model BIOMD0000000872

[luciansmith]

Because the existing layout was invalid for the reactions, I just copied the list of reaction layouts from verma2017.xml into MODEL1605030001_url.xml

This results in a valid model; however, I haven't tried to actually look at the resulting layout to see if it makes sense, if the reactions in question actually exist, etc. This shouldn't take long (with the right tools), but needs to be checked.

[jonrkarr]

@luciansmith's suggestion to manually review this is good.

Alternatively, here's a simpler path toward valid, albeit less useful SBML:

• Remove the layout from this model (from manual-fixes subdirectory)
• Commit the changes to this repository

[freiburgermsu]

@jonrkarr Do you mean removing this tag <layout:listOfLayouts xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> from the verma2017.xml? It constitutes ~1/4 of the file.

[jonrkarr]

Yes, this was my suggestion. @luciansmith is that fine with you?

[luciansmith]

I still think we should look at the layout to see if it makes sense. The file is already valid; we don't have to do anything.