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Updated snomed codes, based on the exchange discusssion with Dylan #1520

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merged 2 commits into from
Oct 16, 2024
Merged

Updated snomed codes, based on the exchange discusssion with Dylan #1520

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5edc610
Updated snomed codes, based on the discusssion with dylan
Oct 11, 2024
6140ea6
Updated the SNOMED codes to strings
Oct 15, 2024
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8 changes: 4 additions & 4 deletions src/main/resources/modules/acute_myeloid_leukemia.json
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Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,7 @@
{
"system": "SNOMED-CT",
"code": 47318007,
"display": "Neutropenia (disorder)"
"display": "Drug-induced neutropenia (disorder)"
}
],
"direct_transition": "Transfer_to_Stepdown"
Expand Down Expand Up @@ -220,7 +220,7 @@
{
"system": "SNOMED-CT",
"code": 91861009,
"display": "Acute myeloid leukemia, disease (disorder)"
"display": "Acute myeloid leukemia (disorder)"
}
]
},
Expand Down Expand Up @@ -447,7 +447,7 @@
{
"system": "SNOMED-CT",
"code": 449214001,
"display": "Transfer to stepdown"
"display": "Transfer to stepdown unit (procedure)"
}
],
"duration": {
Expand Down Expand Up @@ -707,7 +707,7 @@
{
"system": "SNOMED-CT",
"code": 91861009,
"display": "Acute myeloid leukemia, disease (disorder)"
"display": "Acute myeloid leukemia (disorder)"
}
],
"direct_transition": "Chemotherapy_Inpatient_Encounter"
Expand Down
36 changes: 18 additions & 18 deletions src/main/resources/modules/allergic_rhinitis.json
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Original file line number Diff line number Diff line change
Expand Up @@ -117,8 +117,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "367498001",
"display": "Seasonal allergic rhinitis"
"code": 367498001,
"display": "Seasonal allergic rhinitis (disorder)"
}
],
"direct_transition": "Allergic_Rhinitis_Symptom1"
Expand All @@ -130,8 +130,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "446096008",
"display": "Perennial allergic rhinitis"
"code": 446096008,
"display": "Perennial allergic rhinitis (disorder)"
}
],
"direct_transition": "Allergic_Rhinitis_Symptom1"
Expand All @@ -143,8 +143,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "232353008",
"display": "Perennial allergic rhinitis with seasonal variation"
"code": 232353008,
"display": "Perennial allergic rhinitis with seasonal variation (disorder)"
}
],
"direct_transition": "Allergic_Rhinitis_Symptom1"
Expand All @@ -157,8 +157,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "185345009",
"display": "Encounter for symptom"
"code": 185345009,
"display": "Encounter for symptom (procedure)"
}
],
"direct_transition": "Prescribe_OTC_Antihistamine"
Expand Down Expand Up @@ -263,8 +263,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "419263009",
"display": "Allergy to tree pollen"
"code": 419263009,
"display": "Allergy to tree pollen (finding)"
}
]
},
Expand All @@ -273,8 +273,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "418689008",
"display": "Allergy to grass pollen"
"code": 418689008,
"display": "Allergy to grass pollen (finding)"
}
]
},
Expand All @@ -283,8 +283,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "232347008",
"display": "Dander (animal) allergy"
"code": 717234006,
"display": "Allergy to animal protein (finding)"
}
]
},
Expand All @@ -293,8 +293,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "232350006",
"display": "House dust mite allergy"
"code": 232350006,
"display": "Allergy to dust mite protein (finding)"
}
]
},
Expand All @@ -303,8 +303,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "419474003",
"display": "Allergy to mould"
"code": 419474003,
"display": "Allergy to mold (finding)"
}
]
}
Expand Down
14 changes: 7 additions & 7 deletions src/main/resources/modules/allergies.json
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Original file line number Diff line number Diff line change
Expand Up @@ -101,8 +101,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "185347001",
"display": "Encounter for problem"
"code": 185347001,
"display": "Encounter for problem (procedure)"
}
],
"conditional_transition": [
Expand Down Expand Up @@ -130,8 +130,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "395142003",
"display": "Allergy screening test"
"code": 395142003,
"display": "Allergy screening test (procedure)"
}
],
"direct_transition": "Allergy_Panel"
Expand All @@ -158,15 +158,15 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "384758001",
"code": 384758001,
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I didn't notice this before but there are some instances in the diff like this one, where neither the code nor display value changed, but the code was changed from a string to a number. Any idea what happened here? It doesn't seem like all codes were changed. This isn't a huge deal but if it's possible to not change the type if there wasn't a value change, or just make them all strings instead of numbers, that would be preferable to making them numbers

"display": "Self-care interventions (procedure)"
}
],
"activities": [
{
"system": "SNOMED-CT",
"code": "58332002",
"display": "Allergy education"
"code": 58332002,
"display": "Allergy education (procedure)"
}
],
"conditional_transition": [
Expand Down
60 changes: 30 additions & 30 deletions src/main/resources/modules/allergies/allergy_panel.json
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Original file line number Diff line number Diff line change
Expand Up @@ -32,8 +32,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "91935009",
"display": "Allergy to peanuts"
"code": 91935009,
"display": "Allergy to peanut (finding)"
}
]
},
Expand Down Expand Up @@ -92,8 +92,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "91934008",
"display": "Allergy to nut"
"code": 91934008,
"display": "Allergy to nut (finding)"
}
]
},
Expand Down Expand Up @@ -152,8 +152,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "417532002",
"display": "Allergy to fish"
"code": 417532002,
"display": "Allergy to fish (finding)"
}
]
},
Expand Down Expand Up @@ -214,8 +214,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "300913006",
"display": "Shellfish allergy"
"code": 300913006,
"display": "Allergy to shellfish (finding)"
}
]
},
Expand Down Expand Up @@ -274,8 +274,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "420174000",
"display": "Allergy to wheat"
"code": 420174000,
"display": "Allergy to wheat (finding)"
}
]
},
Expand Down Expand Up @@ -334,8 +334,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "91930004",
"display": "Allergy to eggs"
"code": 213020009,
"display": "Allergy to egg protein (finding)"
}
]
},
Expand Down Expand Up @@ -394,8 +394,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "714035009",
"display": "Allergy to soya"
"code": 782594005,
"display": "Allergy to soy protein (finding)"
}
]
},
Expand Down Expand Up @@ -454,8 +454,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "425525006",
"display": "Allergy to dairy product"
"code": 414285001,
"display": "Allergy to food (finding)"
}
]
},
Expand Down Expand Up @@ -514,8 +514,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "419263009",
"display": "Allergy to tree pollen"
"code": 419263009,
"display": "Allergy to tree pollen (finding)"
}
]
},
Expand Down Expand Up @@ -574,8 +574,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "418689008",
"display": "Allergy to grass pollen"
"code": 418689008,
"display": "Allergy to grass pollen (finding)"
}
]
},
Expand Down Expand Up @@ -634,8 +634,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "232347008",
"display": "Dander (animal) allergy"
"code": 717234006,
"display": "Allergy to animal protein (finding)"
}
]
},
Expand Down Expand Up @@ -694,8 +694,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "232350006",
"display": "House dust mite allergy"
"code": 232350006,
"display": "Allergy to dust mite protein (finding)"
}
]
},
Expand Down Expand Up @@ -754,8 +754,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "419474003",
"display": "Allergy to mould"
"code": 419474003,
"display": "Allergy to mold (finding)"
}
]
},
Expand Down Expand Up @@ -814,8 +814,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "424213003",
"display": "Allergy to bee venom"
"code": 424213003,
"display": "Allergy to bee venom (finding)"
}
]
},
Expand Down Expand Up @@ -874,8 +874,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "300916003",
"display": "Latex allergy"
"code": 1003755004,
"display": "Allergy to Hevea brasiliensis latex protein (finding)"
}
]
},
Expand Down
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