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Helm_pinn_sine_vti_adaptive.py
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Helm_pinn_sine_vti_adaptive.py
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"""
@author: Chao Song
"""
import tensorflow as tf
import numpy as np
import matplotlib.pyplot as plt
import scipy.io
from scipy.interpolate import griddata
import time
import cmath
np.random.seed(1234)
tf.set_random_seed(1234)
fre = 6.0
PI = 3.1415926
omega = 2.0*PI*fre
niter = 100000
w0 = 3
w0_n = []
misfit = []
misfit1 = []
def fwd_gradients(Y, x):
dummy = tf.ones_like(Y)
G = tf.gradients(Y, x, grad_ys=dummy, colocate_gradients_with_ops=True)[0]
Y_x = tf.gradients(G, dummy, colocate_gradients_with_ops=True)[0]
return Y_x
class PhysicsInformedNN:
# Initialize the class
def __init__(self, x, z, A, B, C, ps, m, eta, delta, layers, omega):
X = np.concatenate([x, z], 1)
self.iter=0
self.start_time=0
self.lb = X.min(0)
self.ub = X.max(0)
self.X = X
self.x = X[:,0:1]
self.z = X[:,1:2]
self.ps = ps
self.m = m
self.eta = eta
self.delta = delta
self.A = A
self.B = B
self.C = C
self.layers = layers
self.omega = omega
# Initialize NN
self.weights, self.biases, self.w0 = self.initialize_NN(layers)
# tf placeholders
self.sess = tf.Session(config=tf.ConfigProto(allow_soft_placement=True,
log_device_placement=True))
self.x_tf = tf.placeholder(tf.float32, shape=[None, self.x.shape[1]])
self.z_tf = tf.placeholder(tf.float32, shape=[None, self.z.shape[1]])
self.u_real_pred, self.u_imag_pred, self.u_loss, self.q_loss = self.net_NS(self.x_tf, self.z_tf)
# loss function we define
self.loss = tf.reduce_sum(tf.square(tf.abs(self.u_loss))) + tf.reduce_sum(tf.square(tf.abs(self.q_loss)))
# optimizer used by default (in original paper)
self.optimizer = tf.contrib.opt.ScipyOptimizerInterface(self.loss,
method = 'L-BFGS-B',
options = {'maxiter': 50000,
'maxfun': 50000,
'maxcor': 50,
'maxls': 50,
'ftol' : 1.0 * np.finfo(float).eps})
self.optimizer_Adam = tf.train.AdamOptimizer()
self.train_op_Adam = self.optimizer_Adam.minimize(self.loss)
init = tf.global_variables_initializer()
self.sess.run(init)
def initialize_NN(self, layers):
weights = []
biases = []
num_layers = len(layers)
w0 = tf.Variable(tf.zeros([1,1], dtype=tf.float32)+3.0, dtype=tf.float32)
for l in range(0,num_layers-1):
if (l == 0):
W = self.xavier_init_first(size=[layers[l], layers[l+1]])
else:
W = self.xavier_init(w0,size=[layers[l], layers[l+1]])
b = tf.Variable(tf.zeros([1,layers[l+1]], dtype=tf.float32)+0.0, dtype=tf.float32)
weights.append(W)
biases.append(b)
return weights, biases, w0
def xavier_init(self, w0, size):
in_dim = size[0]
out_dim = size[1]
w_std = np.sqrt(1.0/in_dim)/w0
return tf.Variable(tf.random_uniform([in_dim, out_dim], -w_std, w_std), dtype=tf.float32)
def xavier_init_first(self, size):
in_dim = size[0]
out_dim = size[1]
w_std = (1./np.sqrt(in_dim))
return tf.Variable(tf.random_uniform([in_dim, out_dim], -w_std, w_std), dtype=tf.float32)
def neural_net(self, X, weights, biases, w0):
num_layers = len(weights) + 1
H = 2.0*(X - self.lb)/(self.ub - self.lb) - 1.0
H = w0*H
for l in range(0,num_layers-2):
W = weights[l]
b = biases[l]
H = tf.sin(tf.add(tf.matmul(H, W), b))
W = weights[-1]
b = biases[-1]
Y = tf.add(tf.matmul(H, W), b)
return Y
def net_NS(self, x, z):
omega = self.omega
m = self.m
eta = self.eta
delta = self.delta
ps = self.ps
A = self.A
B = self.B
C = self.C
u_and_q = self.neural_net(tf.concat([x,z], 1), self.weights, self.biases, self.w0)
u_real = u_and_q[:,0:1]
u_imag = u_and_q[:,1:2]
q_real = u_and_q[:,2:3]
q_imag = u_and_q[:,3:4]
u = tf.complex(u_real, u_imag)
q = tf.complex(q_real, q_imag)
dudx = fwd_gradients(u, x)
dudz = fwd_gradients(u, z)
dudxx = fwd_gradients((A*dudx), x)
dudzz = fwd_gradients((B*dudz), z)
dqdx = fwd_gradients(q, x)
dqdz = fwd_gradients(q, z)
dqdxx = fwd_gradients((A*dqdx), x)
dqdzz = fwd_gradients((B*dqdz), z)
u_loss = C*omega*omega*m*u + dudxx + dqdxx + dudzz/(1+2*delta) - ps # L u - f
q_loss = C*omega*omega*m*q + 2*eta*(dudxx + dqdxx)
return u_real, u_imag, u_loss, q_loss
def callback(self, loss):
#print('Loss: %.3e' % (loss))
misfit1.append(loss)
self.iter=self.iter+1
if self.iter % 10 == 0:
elapsed = time.time() - self.start_time
print('It: %d, LBFGS Loss: %.3e,Time: %.2f' %
(self.iter, loss, elapsed))
self.start_time = time.time()
def train(self, nIter):
tf_dict = {self.x_tf: self.x, self.z_tf: self.z}
start_time = time.time()
for it in range(nIter):
self.sess.run(self.train_op_Adam, tf_dict)
loss_value = self.sess.run(self.loss, tf_dict)
misfit.append(loss_value)
# Print
if it % 10 == 0:
elapsed = time.time() - start_time
[loss_value, w0_value] = self.sess.run([self.loss, self.w0], tf_dict)
w0_n.append(w0_value)
print('It: %d, Loss: %.3e,Time: %.2f,w0:%.2f' %
(it, loss_value, elapsed,w0_value))
start_time = time.time()
self.optimizer.minimize(self.sess,
feed_dict = tf_dict,
fetches = [self.loss],
loss_callback = self.callback)
def predict(self, x_star, z_star):
tf_dict = {self.x_tf: x_star, self.z_tf: z_star}
u_real_star = self.sess.run(self.u_real_pred, tf_dict)
u_imag_star = self.sess.run(self.u_imag_pred, tf_dict)
return u_real_star, u_imag_star
if __name__ == "__main__":
layers = [2, 40, 40, 40, 40, 40, 40,40, 40, 4]
# Load Data
data = scipy.io.loadmat('vti_scatter_6Hz_sine.mat')
u_real = data['U_real']
u_imag = data['U_imag']
ps = data['Ps']
x = data['x']
z = data['z']
m = data['m']
eta = data['eta']
delta = data['delta']
A = data['A']
B = data['B']
C = data['C']
N = x.shape[0]
N_train = N
# Training Data
idx = np.random.choice(N, N_train, replace=False)
x_train = x[idx,:]
z_train = z[idx,:]
ps_train = ps[idx,:]
A_train = A[idx,:]
B_train = B[idx,:]
C_train = C[idx,:]
m_train = m[idx,:]
eta_train = eta[idx,:]
delta_train = delta[idx,:]
# Training
model = PhysicsInformedNN(x_train, z_train, A_train, B_train, C_train, ps_train, m_train, eta_train, delta_train, layers, omega)
model.train(niter)
scipy.io.savemat('w0_scatter_vti.mat',{'w0':w0_n})
scipy.io.savemat('loss_adam_sine.mat',{'misfit':misfit})
scipy.io.savemat('loss_lbfgs_sine.mat',{'misfit1':misfit1})
# Test Data
x_star = x
z_star = z
u_real_star = u_real
u_imag_star = u_imag
# Prediction
u_real_pred, u_imag_pred = model.predict(x_star, z_star)
# Error
scipy.io.savemat('u_real_pred_sine_vti.mat',{'u_real_pred':u_real_pred})
scipy.io.savemat('u_imag_pred_sine_vti.mat',{'u_imag_pred':u_imag_pred})
#scipy.io.savemat('u_real_star_10hz.mat',{'u_real_star':u_real_star})
#scipy.io.savemat('u_imag_star_10hz.mat',{'u_imag_star':u_imag_star})