Releases: svkucheryavski/mdatools
Releases · svkucheryavski/mdatools
v. 0.7.0
- interval PLS variable selection (iPLS) is implemented
- normalization was added to preprocessing methods (
prep.norm
) - method
getRegcoeffs
was added to PLS model - automatic selection of optimal components in PLS (Wold's criterion and first local min)
- parameter
cgroup
for plots now can work with factors correctly (including ones with text levels) - all documentation was converted to roxygen2 format
- NAMESPACE file is generated by roxygen2
- fixed several small bugs and typos
v. 0.6.2
- Q2 residuals renamed to Q (Squared residual distance)
- All plots have parameters
lab.col
andlab.cex
for changing color and font size for data point labels
mdatools v. 0.6.1
- fixed a bug led to incorrect calculation of specificity
- jack-knife confidence intervals now also calculated for PLS-DA models
- confidence intervals for regression coefficients are shown by default if calculated
mdatools v. 0.6.0
- randomization test for PLS has been added, see
?randtest
- systematic and repeated random cross-validation are available, see
?crossval
- fixed bug with labels on bar plot with confidence intervals
- fixed bug in PLS when using maximum number of components lead to NA values in weights
mdatools v. 0.5.3
- small bug fixes
- improvements to documentation
mdatools v. 0.5.2
- fixed bug for computing classification performance for numeric class names
- improvements to SIMCA implementation
mdatools v. 0.5.1
- Help information has been refactored using roxygen2
- Added extra preprocessing methods (MSC)
- Added VIP scores calculation and plot for PLS and PLS-DA models
- Added Selectivity ratio calculation and plot for PLS and PLS-DA models
- Added calculation of confidence intervals for PLS regression coefficient using jack-knife
- Bug fixes and small improvements
- CRAN ready release
mdatools v. 0.4.0
- New
classres
class for representation and visualisation of classification results - in PCA model, limits for T2 and Q2 now are calculated for all available components
- in PCA results, limits for T2 and Q2 calculated for a model are kept and shown on residuals plot
- added parameters
xticklabels
andyticklabels
tomdaplot
andmdaplotg
functions - New
simca
andsimcares
classes for one-class SIMCA model and results - New
simcam
andsimcamres
classes for multiclass SIMCA model and results - New
plsda
andplsdares
classes for PLS-DA model and results - bug fixes and improvements
mdatools v. 0.3.2
- Enhancements in group bar plot
- Fixed bugs with wrong labels on a bar plot with negative values
mdatools v. 0.3.1
- Small bug fixes and changes to README.md.