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environment.yml
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environment.yml
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name: phenores
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- fasttree=2.1.10=0
- filechunkio=1.6=py36_0
- ftputil=3.2=py36_0
- mash=2.0=gsl1.16_1
- pysftp=0.2.9=py36_0
- rsa=3.1.4=py36_0
- snakemake=4.8.0=py36_0
- aioeasywebdav=2.2.0=py36_0
- cachetools=2.0.1=py_0
- capnproto=0.6.1=0
- google-api-core=0.1.4=py_0
- google-auth=1.4.1=py_0
- google-cloud-core=0.28.1=py_0
- google-cloud-storage=1.6.0=py_0
- google-resumable-media=0.3.1=py_0
- googleapis-common-protos=1.5.3=py36_0
- gsl=1.16=0
- prettytable=0.7.2=py36_1
- python-irodsclient=0.7.0=py_0
- ratelimiter=1.2.0=py36_0
- xmlrunner=1.7.7=py_0
- _r-mutex=1.0.0=mro_2
- aiohttp=3.1.0=py36h14c3975_0
- appdirs=1.4.3=py36_0
- asn1crypto=0.24.0=py36_0
- async-timeout=2.0.1=py36_0
- attrs=17.4.0=py36_0
- bcrypt=3.1.4=py36h621fe67_0
- binutils_impl_linux-64=2.28.1=had2808c_3
- binutils_linux-64=7.2.0=25
- bleach=2.1.3=py36_0
- boto3=1.5.32=py36_0
- botocore=1.8.46=py36_0
- ca-certificates=2018.03.07=0
- cairo=1.14.12=h77bcde2_0
- certifi=2018.1.18=py36_0
- cffi=1.11.5=py36h9745a5d_0
- chardet=3.0.4=py36h0f667ec_1
- configargparse=0.13.0=py36_0
- cryptography=2.2.1=py36h14c3975_0
- curl=7.58.0=h84994c4_0
- datrie=0.7.1=py36_0
- decorator=4.2.1=py36_0
- docutils=0.14=py36hb0f60f5_0
- dropbox=8.7.1=py36_0
- entrypoints=0.2.3=py36h1aec115_2
- fontconfig=2.12.6=h49f89f6_0
- freetype=2.8=hab7d2ae_1
- gcc_impl_linux-64=7.2.0=habb00fd_3
- gcc_linux-64=7.2.0=25
- gfortran_impl_linux-64=7.2.0=hdf63c60_3
- gfortran_linux-64=7.2.0=25
- glib=2.53.6=h5d9569c_2
- gmp=6.1.2=h6c8ec71_1
- graphite2=1.3.10=hf63cedd_1
- gxx_impl_linux-64=7.2.0=hdf63c60_3
- gxx_linux-64=7.2.0=25
- harfbuzz=1.7.4=hc5b324e_0
- html5lib=1.0.1=py36h2f9c1c0_0
- icu=58.2=h9c2bf20_1
- idna=2.6=py36h82fb2a8_1
- idna_ssl=1.0.1=py36_0
- intel-openmp=2018.0.0=8
- ipykernel=4.8.2=py36_0
- ipython=6.2.1=py36h88c514a_1
- ipython_genutils=0.2.0=py36hb52b0d5_0
- jedi=0.11.1=py36_0
- jinja2=2.10=py36ha16c418_0
- jmespath=0.9.3=py36hd3948f9_0
- jsonschema=2.6.0=py36h006f8b5_0
- jupyter_client=5.2.3=py36_0
- jupyter_core=4.4.0=py36h7c827e3_0
- libcurl=7.58.0=h1ad7b7a_0
- keras=2.1.3=py36_0
- libedit=3.1=heed3624_0
- libffi=3.2.1=hd88cf55_4
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=hdf63c60_3
- libgfortran-ng=7.2.0=hdf63c60_3
- libpng=1.6.34=hb9fc6fc_0
- libprotobuf=3.5.1=h6f1eeef_0
- libsodium=1.0.15=hf101ebd_0
- libssh2=1.8.0=h9cfc8f7_4
- libstdcxx-ng=7.2.0=hdf63c60_3
- libxcb=1.12=hcd93eb1_4
- libxml2=2.9.7=h26e45fe_0
- markupsafe=1.0=py36hd9260cd_1
- mistune=0.8.3=py36_0
- mkl=2018.0.2=1
- mkl_fft=1.0.1=py36h3010b51_0
- mkl_random=1.0.1=py36h629b387_0
- mro-base=3.4.3=h1c2f66e_0
- mro-basics=3.4.3=0
- multidict=4.1.0=py36h14c3975_0
- nbconvert=5.3.1=py36hb41ffb7_0
- nbformat=4.4.0=py36h31c9010_0
- ncurses=6.0=h9df7e31_2
- notebook=5.4.0=py36_0
- numpy=1.14.2=py36hdbf6ddf_1
- openssl=1.0.2o=h20670df_0
- pandas=0.22.0=py36hf484d3e_0
- pandoc=1.19.2.1=hea2e7c5_1
- pandocfilters=1.4.2=py36ha6701b7_1
- pango=1.41.0=hd475d92_0
- paramiko=2.4.1=py36_0
- parso=0.1.1=py36h35f843b_0
- pcre=8.41=hc27e229_1
- pexpect=4.4.0=py36_0
- pickleshare=0.7.4=py36h63277f8_0
- pip=9.0.1=py36_5
- pixman=0.34.0=hceecf20_3
- prompt_toolkit=1.0.15=py36h17d85b1_0
- protobuf=3.5.1=py36hf484d3e_0
- psutil=5.4.3=py36h14c3975_0
- ptyprocess=0.5.2=py36h69acd42_0
- pyasn1=0.4.2=py36h4d1db45_0
- pyasn1-modules=0.2.1=py36hc893066_0
- pycparser=2.18=py36hf9f622e_1
- pygments=2.2.0=py36h0d3125c_0
- pynacl=1.2.0=py36hb6d7a8d_0
- pyopenssl=17.5.0=py36h20ba746_0
- pysocks=1.6.8=py36_0
- python=3.6.4=hc3d631a_3
- python-dateutil=2.7.0=py36_0
- pytz=2018.3=py36_0
- pyyaml=3.12=py36hafb9ca4_1
- pyzmq=17.0.0=py36h14c3975_0
- r=3.4.3=mro343_0
- r-boot=1.3_20=mro343_0
- r-checkpoint=0.4.3=mro343_0
- r-class=7.3_14=mro343_0
- r-cluster=2.0.6=mro343_0
- r-codetools=0.2_15=mro343_0
- r-curl=3.1=mro343_0
- r-deployrrserve=9.0.0=mro343_0
- r-doparallel=1.0.12=mro343_0
- r-foreach=1.4.5=mro343_0
- r-foreign=0.8_69=mro343_0
- r-iterators=1.0.9=mro343_0
- r-jsonlite=1.5=mro343_0
- r-kernsmooth=2.23_15=mro343_0
- r-lattice=0.20_35=mro343_0
- r-mass=7.3_47=mro343_0
- r-matrix=1.2_12=mro343_0
- r-mgcv=1.8_22=mro343_0
- r-microsoftr=3.4.3.0097=mro343_0
- r-nlme=3.1_131=mro343_0
- r-nnet=7.3_12=mro343_0
- r-png=0.1_7=mro343_0
- r-r6=2.2.2=mro343_0
- r-recommended=3.4.3=mro343_0
- r-revoioq=8.0.9=mro343_0
- r-revomods=11.0.0=mro343_0
- r-revoutilsmath=10.0.1=mro343_0
- r-rpart=4.1_11=mro343_0
- r-runit=0.4.26=mro343_0
- r-spatial=7.3_11=mro343_0
- r-survival=2.41_3=mro343_0
- readline=7.0=ha6073c6_4
- requests=2.18.4=py36he2e5f8d_1
- s3transfer=0.1.13=py36_0
- send2trash=1.5.0=py36_0
- setuptools=38.5.1=py36_0
- simplegeneric=0.8.1=py36_2
- six=1.11.0=py36h372c433_1
- sqlite=3.22.0=h1bed415_0
- terminado=0.8.1=py36_1
- scipy=1.0.0=py36hbf646e7_0
- sip=4.18.1=py36h51ed4ed_2
- tensorflow=1.1.0=np112py36_0
- testpath=0.3.1=py36h8cadb63_0
- tk=8.6.7=hc745277_3
- tornado=5.0=py36_0
- traitlets=4.3.2=py36h674d592_0
- urllib3=1.22=py36hbe7ace6_0
- wcwidth=0.1.7=py36hdf4376a_0
- webencodings=0.5.1=py36h800622e_1
- werkzeug=0.14.1=py36_0
- wheel=0.30.0=py36hfd4bba0_1
- wrapt=1.10.11=py36h28b7045_0
- xz=5.2.3=h55aa19d_2
- yaml=0.1.7=had09818_2
- yarl=1.1.1=py36h14c3975_0
- zeromq=4.2.3=h439df22_3
- zlib=1.2.11=ha838bed_2
- r-assertthat=0.2.0=mro343h889e2dd_0
- r-backports=1.1.2=mro343h086d26f_0
- r-base64enc=0.1_3=mro343h086d26f_0
- r-bh=1.65.0_1=mro343h889e2dd_0
- r-bindr=0.1=mro343h889e2dd_0
- r-bindrcpp=0.2=mro343h599a50d_0
- r-broom=0.4.3=mro343h889e2dd_0
- r-callr=1.0.0=mro343h889e2dd_0
- r-caret=6.0_78=mro343h086d26f_0
- r-cellranger=1.1.0=mro343h889e2dd_0
- r-cli=1.0.0=mro343h889e2dd_0
- r-clipr=0.4.0=mro343h889e2dd_0
- r-colorspace=1.3_2=mro343h086d26f_0
- r-crayon=1.3.4=mro343h889e2dd_0
- r-cvst=0.2_1=mro343h889e2dd_0
- r-data.table=1.10.4_3=mro343h086d26f_0
- r-dbi=0.7=mro343h889e2dd_0
- r-dbplyr=1.1.0=mro343h889e2dd_0
- r-ddalpha=1.3.1=mro343h44b0c2a_0
- r-deoptimr=1.0_8=mro343h889e2dd_0
- r-dichromat=2.0_0=mro343h889e2dd_0
- r-digest=0.6.13=mro343h086d26f_0
- r-dimred=0.1.0=mro343h889e2dd_0
- r-dplyr=0.7.4=mro343h599a50d_0
- r-drr=0.0.2=mro343h889e2dd_0
- r-essentials=3.4.3=mro343_0
- r-evaluate=0.10.1=mro343h889e2dd_0
- r-forcats=0.2.0=mro343h889e2dd_0
- r-formatr=1.5=mro343h889e2dd_0
- r-ggplot2=2.2.1=mro343h889e2dd_0
- r-glmnet=2.0_13=mro343h4829c52_0
- r-glue=1.2.0=mro343h086d26f_0
- r-gower=0.1.2=mro343h086d26f_0
- r-gtable=0.2.0=mro343h889e2dd_0
- r-haven=1.1.0=mro343h599a50d_0
- r-hexbin=1.27.1=mro343h4829c52_0
- r-highr=0.6=mro343h889e2dd_0
- r-hms=0.4.0=mro343h889e2dd_0
- r-htmltools=0.3.6=mro343h599a50d_0
- r-htmlwidgets=0.9=mro343h889e2dd_0
- r-httpuv=1.3.5=mro343h599a50d_0
- r-httr=1.3.1=mro343h889e2dd_0
- r-ipred=0.9_6=mro343h086d26f_0
- r-irdisplay=0.4.4=mro343h889e2dd_0
- r-irkernel=0.8.11=mro343_0
- r-kernlab=0.9_25=mro343h44b0c2a_0
- r-knitr=1.18=mro343h889e2dd_0
- r-labeling=0.3=mro343h889e2dd_0
- r-lava=1.5.1=mro343h889e2dd_0
- r-lazyeval=0.2.1=mro343h086d26f_0
- r-lubridate=1.7.1=mro343h599a50d_0
- r-magrittr=1.5=mro343h889e2dd_0
- r-maps=3.2.0=mro343h086d26f_0
- r-markdown=0.8=mro343h086d26f_0
- r-mime=0.5=mro343h086d26f_0
- r-mnormt=1.5_5=mro343h4829c52_0
- r-modelmetrics=1.1.0=mro343h599a50d_0
- r-modelr=0.1.1=mro343h889e2dd_0
- r-munsell=0.4.3=mro343h889e2dd_0
- r-numderiv=2016.8_1=mro343h889e2dd_0
- r-openssl=0.9.9=mro343h086d26f_0
- r-pbdzmq=0.2_6=mro343h599a50d_1
- r-pillar=1.0.1=mro343h889e2dd_0
- r-pkgconfig=2.0.1=mro343h889e2dd_0
- r-plogr=0.1_1=mro343h889e2dd_0
- r-plyr=1.8.4=mro343h599a50d_0
- r-prodlim=1.6.1=mro343h599a50d_0
- r-psych=1.7.8=mro343h889e2dd_0
- r-purrr=0.2.4=mro343h086d26f_0
- r-quantmod=0.4_12=mro343h889e2dd_0
- r-randomforest=4.6_12=mro343h4829c52_0
- r-rbokeh=0.6.3=mro343_0
- r-rcolorbrewer=1.1_2=mro343h889e2dd_0
- r-rcpp=0.12.14=mro343h599a50d_0
- r-rcpproll=0.2.2=mro343h599a50d_0
- r-readr=1.1.1=mro343h599a50d_0
- r-readxl=1.0.0=mro343h599a50d_0
- r-recipes=0.1.1=mro343h889e2dd_0
- r-rematch=1.0.1=mro343h889e2dd_0
- r-repr=0.12.0=mro343h889e2dd_0
- r-reprex=0.1.1=mro343h889e2dd_0
- r-reshape2=1.4.3=mro343h599a50d_0
- r-rlang=0.1.6=mro343h086d26f_0
- r-rmarkdown=1.8=mro343h889e2dd_0
- r-robustbase=0.92_8=mro343h4829c52_0
- r-rprojroot=1.3_1=mro343h889e2dd_0
- r-rstudioapi=0.7=mro343h889e2dd_0
- r-rvest=0.3.2=mro343h889e2dd_0
- r-scales=0.5.0=mro343h599a50d_0
- r-selectr=0.3_1=mro343h889e2dd_0
- r-sfsmisc=1.1_1=mro343h889e2dd_0
- r-shiny=1.0.5=mro343h889e2dd_0
- r-sourcetools=0.1.6=mro343h599a50d_0
- r-stringi=1.1.6=mro343h599a50d_0
- r-stringr=1.2.0=mro343h889e2dd_0
- r-tibble=1.4.1=mro343h086d26f_0
- r-tidyr=0.7.2=mro343h599a50d_0
- r-tidyselect=0.2.3=mro343h599a50d_0
- r-tidyverse=1.2.1=mro343h889e2dd_0
- r-timedate=3042.101=mro343h889e2dd_0
- r-ttr=0.23_2=mro343h4829c52_0
- r-utf8=1.1.2=mro343h086d26f_0
- r-uuid=0.1_2=mro343h086d26f_0
- r-viridislite=0.2.0=mro343h889e2dd_0
- r-whisker=0.3_2=mro343h889e2dd_0
- r-withr=2.1.1=mro343h889e2dd_0
- r-xml2=1.1.1=mro343h599a50d_0
- r-xtable=1.8_2=mro343h889e2dd_0
- r-xts=0.10_1=mro343h4829c52_0
- r-yaml=2.1.16=mro343h086d26f_0
- r-zoo=1.8_0=mro343h086d26f_0
- pip:
- biopython==1.71
- cycler==0.10.0
- kiwisolver==1.0.1
- matplotlib==2.2.2
- click==6.7
- coverage==4.4.2
- cycler==0.10.0
- imbalanced-learn==0.3.2
- kmerpredict==0.0.1
- lmdb==0.93
- matplotlib==2.1.2
- nose2==0.7.3
- pyparsing==2.2.0
- python-dotenv==0.8.2
- scikit-learn==0.19.1
- scipy==1.0.1
- sklearn==0.0
- xlrd==1.1.0
prefix: /home/matt/anaconda3/envs/phenores
- sklearn==0.0
- xlrd==1.1.0