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Welcome to the acheron wiki!

acheron is a command line tool for analysis of whole genome sequence (WGS) data using machine learning workflows.

Get going now by visiting Getting Started

An example workflow and pages to explain each, is as follows:

1. Download antimicrobial resistance (AMR) data download
2. Download matching whole-genome sequence data download
3. Turn AMR data into machine-learning ready labels labels
4. Turn sequences into machine-learning ready features features
5. Train machine-learning models models COMING SOON. Use your models to make predictions on new data predict COMING SOON. Annotate your genomes and look at what regions your ML models are finding the most important. annotate COMING SOON. Compare what your ML models are looking at COMING SOON. Build graphs to display your results.