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SuperMoM

This repo hosts the Super (awesome) Meta-omics Miner tool.

What is SuperMoM?

Summary

Suite of scripts (mostly in R and Perl) to parse, load and analyze Meta*omics data using a Graph database (Neo4j).

===== #WARNING:

  • The code is no where near a stable release and is missing substantial portions of the suite.
  • The documentation is more like scribbles of the ideas in my head and probably won't make any sense unless you get in touch.
  • Please do get in touch if you were intrigued.

=====

Dependencies

This version of SuperMoM has been tested with the following dependencies on systems with a 64-bit architecture running on RHEL6, Mac OS X 10.9 and above.

Neo4j

  • Version: 2.1.7

Perl

  • Version: 5.18.2
  • Packages:
    • Bio::Perl
    • REST::Neo4p
    • Term::ProgressBar

R

  • Version 3.1.2
  • Packages:
    • RNeo4j
    • igraph
    • ggplot2
    • googleVis

Contact

Sunit Jain

sunitj [at] umich [dot] edu

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