Remove non-poetry dependencies

[edsu]

To prevent confusion we should remove the previously installed pywb and cdxj-indexer (those that were not installed with Poetry) that are in /opt/apt/was/.local. This can be done by sshing into each environment and doing a:

pip uninstall pywb cdxj-indexer

The Docker instructions also need to be modified to use poetry run with cdxj-indexer. Now that nginx is no longer being used here we can move the contents of the pywb directory in this repo up one level into the base directory. This will mean you won't need to cd pywb prior to running commands with poetry run. However this will likely require changing the systemd process to not use the subdirectory when referencing the uwsgi.conf.

[lwrubel]

I think we may also need to add poetry run to the docker compose example cdxj-indexer commands in the README.

[edsu]

Yes, now that nginx is gone I think it may make sense to move the contents of the pywb directory in git up into the main folder? Then a cd pywb won't be needed before the poetry run? This may effect some other things though, such as the systemd process.

Fortunately it looks like the systemd command IS using the Poetry environment. So other than making the Docker dev environment work this is mainly an issue for was_robot_suite I think?

[edsu]

My bad, it looks like poetry IS being used in was_robot_suite after all. I think it would be good to remove the pip installed version in all environments to prevent future confusion.

[edsu]

I've updated the title and description of this ticket to be less alarmist :-)