From f7c746bc8f8aefac1c14395cbc37c8fc59688187 Mon Sep 17 00:00:00 2001 From: Sujai Date: Mon, 28 Apr 2014 16:33:46 +0100 Subject: [PATCH] Update README.md reformatted https://github.com/sujaikumar/assemblage#how-to-make-taxon-specific-blast-databases --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 5a8beb9..b44fb86 100644 --- a/README.md +++ b/README.md @@ -456,8 +456,9 @@ Requirements: 2. Local copy of NCBI blast database (eg: nt or nr) 3. Install BLAST+ suite from ftp://ftp.ncbi.nih.gov/blast/executables/blast+/LATEST -`curl "http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&db=nuccore&dopt=gilist&qty=2000000&filter=all&term=txid1224\[Organism:exp\]" >txid1224.gids` -`blastdb_aliastool -dbtype nucl -gilist txid1224.gids -db /path/to/blastdb/nt -out nt_Proteobacteria` + curl "http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&db=nuccore&dopt=gilist&qty=2000000&filter=all&term=txid1224\[Organism:exp\]" >txid1224.gids + + blastdb_aliastool -dbtype nucl -gilist txid1224.gids -db /path/to/blastdb/nt -out nt_Proteobacteria Remember: