environment.yml

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=main
_r-mutex=1.0.0=anacondar_1
attrs=21.2.0=pyhd8ed1ab_0
backcall=0.2.0=pyh9f0ad1d_0
backports=1.0=py_2
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
bcftools=1.9=ha228f0b_4
beautifulsoup4=4.9.3=pyha847dfd_0
binutils_impl_linux-64=2.33.1=he6710b0_7
binutils_linux-64=2.33.1=h9595d00_15
bioconductor-annotationdbi=1.48.0=r36_0
bioconductor-annotationfilter=1.10.0=r36_0
bioconductor-bamsignals=1.18.0=r36he1b5a44_0
bioconductor-biobase=2.46.0=r36h516909a_0
bioconductor-biocfilecache=1.10.0=r36_0
bioconductor-biocgenerics=0.32.0=r36_0
bioconductor-biocparallel=1.20.0=r36he1b5a44_0
bioconductor-biomart=2.42.0=r36_0
bioconductor-biostrings=2.54.0=r36h516909a_0
bioconductor-biovizbase=1.34.0=r36h516909a_0
bioconductor-bsgenome=1.54.0=r36_0
bioconductor-bsgenome.hsapiens.ucsc.hg19=1.4.0=r36_8
bioconductor-bsgenome.hsapiens.ucsc.hg38=1.4.1=r36_8
bioconductor-delayedarray=0.12.0=r36h516909a_0
bioconductor-dnacopy=1.60.0=r36h6e990d7_0
bioconductor-ensembldb=2.10.0=r36_0
bioconductor-gdsfmt=1.22.0=r36he1b5a44_0
bioconductor-genesis=2.16.0=r36h516909a_0
bioconductor-genomeinfodb=1.22.0=r36_0
bioconductor-genomeinfodbdata=1.2.2=r36_0
bioconductor-genomicalignments=1.22.0=r36h516909a_0
bioconductor-genomicfeatures=1.38.0=r36_0
bioconductor-genomicranges=1.38.0=r36h516909a_0
bioconductor-gwastools=1.32.0=r36_0
bioconductor-iranges=2.20.0=r36h516909a_0
bioconductor-karyoploter=1.12.0=r36_0
bioconductor-protgenerics=1.18.0=r36_0
bioconductor-quantsmooth=1.52.0=r36_0
bioconductor-regioner=1.18.0=r36_0
bioconductor-rhtslib=1.18.0=r36hdb70ac9_1
bioconductor-rsamtools=2.2.0=r36he1b5a44_0
bioconductor-rtracklayer=1.46.0=r36h516909a_0
bioconductor-s4vectors=0.24.0=r36h516909a_0
bioconductor-seqarray=1.26.0=r36he1b5a44_0
bioconductor-seqvartools=1.24.0=r36_0
bioconductor-snprelate=1.20.0=r36he1b5a44_0
bioconductor-snpstats=1.36.0=r36h516909a_0
bioconductor-summarizedexperiment=1.16.0=r36_0
bioconductor-variantannotation=1.32.0=r36h516909a_0
bioconductor-xvector=0.26.0=r36h516909a_0
bioconductor-zlibbioc=1.32.0=r36h516909a_0
blas=1.0=mkl
bleach=4.1.0=pyhd8ed1ab_0
brotlipy=0.7.0=py37hb5d75c8_1001
bs4=4.9.3=hd3eb1b0_0
bwidget=1.9.11=1
bx-python=0.8.10=py37h73d7ac5_0
bzip2=1.0.8=h7b6447c_0
ca-certificates=2021.10.8=ha878542_0
cairo=1.14.12=h8948797_3
certifi=2021.10.8=py37h89c1867_1
cffi=1.14.6=py37h400218f_0
chardet=4.0.0=py37h89c1867_2
crossmap=0.5.2=pyh7b7c402_0
cryptography=3.2.1=py37hc72a4ac_0
curl=7.69.1=hbc83047_0
cycler=0.10.0=py37_0
cython=0.29.22=py37h2531618_0
dbus=1.13.16=hb2f20db_0
decorator=5.1.0=pyhd8ed1ab_0
defusedxml=0.7.1=pyhd8ed1ab_0
eigensoft=6.0.1=0
entrypoints=0.3=pyhd8ed1ab_1003
expat=2.2.9=he6710b0_2
fontconfig=2.13.0=h9420a91_0
freetype=2.10.2=h5ab3b9f_0
fribidi=1.0.9=h7b6447c_0
gcc_impl_linux-64=7.3.0=habb00fd_1
gcc_linux-64=7.3.0=h553295d_15
gfortran_impl_linux-64=7.3.0=hdf63c60_1
gfortran_linux-64=7.3.0=h553295d_15
glib=2.65.0=h3eb4bd4_0
graphite2=1.3.14=h23475e2_0
gsl=2.4=h294904e_1006
gst-plugins-base=1.14.0=hbbd80ab_1
gstreamer=1.14.0=hb31296c_0
gxx_impl_linux-64=7.3.0=hdf63c60_1
gxx_linux-64=7.3.0=h553295d_15
harfbuzz=2.4.0=hca77d97_1
icu=58.2=he6710b0_3
idna=2.10=pyh9f0ad1d_0
importlib-metadata=4.8.1=py37h89c1867_0
intel-openmp=2020.1=217
ipykernel=5.5.5=py37h085eea5_0
ipython=7.29.0=py37h6531663_0
ipython_genutils=0.2.0=py_1
jedi=0.18.0=py37h89c1867_2
jinja2=2.11.3=pyh44b312d_0
jpeg=9b=h024ee3a_2
json5=0.9.5=pyh9f0ad1d_0
jsonschema=4.1.2=pyhd8ed1ab_0
jupyter_client=7.0.6=pyhd8ed1ab_0
jupyter_core=4.9.1=py37h89c1867_0
jupyterlab=2.3.2=pyhd8ed1ab_0
jupyterlab_server=1.2.0=py_0
king=2.2.4=he513fc3_0
kiwisolver=1.2.0=py37hfd86e86_0
krb5=1.17.1=h173b8e3_0
ld_impl_linux-64=2.33.1=h53a641e_7
libblas=3.8.0=21_mkl
libcblas=3.8.0=21_mkl
libcurl=7.69.1=h20c2e04_0
libdeflate=1.0=h14c3975_1
libedit=3.1.20191231=h14c3975_1
libffi=3.3=he6710b0_2
libgcc=7.2.0=h69d50b8_2
libgcc-ng=9.1.0=hdf63c60_0
libgfortran=3.0.0=1
libgfortran-ng=7.3.0=hdf63c60_0
libopenblas=0.3.10=h5a2b251_0
libpng=1.6.37=hbc83047_0
libsodium=1.0.18=h36c2ea0_1
libssh2=1.9.0=h1ba5d50_1
libstdcxx-ng=9.1.0=hdf63c60_0
libtiff=4.1.0=h2733197_1
libuuid=1.0.3=h1bed415_2
libxcb=1.14=h7b6447c_0
libxml2=2.9.10=he19cac6_1
libxslt=1.1.34=hc22bd24_0
llvm-openmp=8.0.1=hc9558a2_0
lxml=4.6.3=py37h9120a33_0
lz4-c=1.9.2=he6710b0_0
lzo=2.10=h7b6447c_2
make=4.2.1=h1bed415_1
markupsafe=1.1.1=py37hb5d75c8_2
matplotlib=3.2.2=0
matplotlib-base=3.2.2=py37hef1b27d_0
matplotlib-inline=0.1.3=pyhd8ed1ab_0
mistune=0.8.4=py37h4abf009_1002
mkl=2020.1=217
mkl-service=2.3.0=py37he904b0f_0
mkl_fft=1.1.0=py37h23d657b_0
mkl_random=1.1.1=py37h0573a6f_0
mysql-connector-c=6.1.6=2
nbconvert=5.6.1=pyhd8ed1ab_2
nbformat=5.1.3=pyhd8ed1ab_0
ncurses=6.2=he6710b0_1
nest-asyncio=1.5.1=pyhd8ed1ab_0
notebook=5.7.11=py37h89c1867_0
numpy=1.18.5=py37ha1c710e_0
numpy-base=1.18.5=py37hde5b4d6_0
openblas=0.3.4=h9ac9557_1000
openjdk=10.0.2=h14c3975_1015
openmp=8.0.1=0
openssl=1.1.1l=h7f8727e_0
packaging=21.2=pyhd8ed1ab_1
pandas=1.0.5=py37h0573a6f_0
pandocfilters=1.5.0=pyhd8ed1ab_0
pango=1.45.3=hd140c19_0
parso=0.8.2=pyhd8ed1ab_0
pcre=8.44=he6710b0_0
perl=5.26.2=h14c3975_0
perl-threaded=5.26.0=0
pexpect=4.8.0=pyh9f0ad1d_2
pickleshare=0.7.5=py_1003
pip=20.1.1=py37_1
pixman=0.40.0=h7b6447c_0
plink=1.90b6.18=h516909a_0
prometheus_client=0.12.0=pyhd8ed1ab_0
prompt-toolkit=3.0.21=pyha770c72_0
ptyprocess=0.7.0=pyhd3deb0d_0
pybigwig=0.3.17=py37hfb91e9a_1
pycparser=2.21=pyhd8ed1ab_0
pygments=2.10.0=pyhd8ed1ab_0
pyopenssl=20.0.1=pyhd8ed1ab_0
pyparsing=2.4.7=py_0
pyqt=5.9.2=py37h05f1152_2
pyrsistent=0.17.3=py37h4abf009_1
pysam=0.15.3=py37hda2845c_1
pysocks=1.7.1=py37h89c1867_4
python=3.7.7=hcff3b4d_5
python-dateutil=2.8.1=py_0
python-lzo=1.12=py37h81344f2_1001
python_abi=3.7=1_cp37m
pytz=2020.1=py_0
pyzmq=19.0.2=py37hac76be4_2
qt=5.9.7=h5867ecd_1
r-abind=1.4_5=r36h6115d3f_0
r-acepack=1.4.1=r36ha65eedd_0
r-argparser=0.4=r36h6115d3f_0
r-asbio=1.6_7=r36hc72bb7e_0
r-askpass=1.0=r36h14c3975_0
r-assertthat=0.2.1=r36h6115d3f_0
r-backports=1.1.4=r36h96ca727_0
r-base=3.6.1=haffb61f_2
r-base64enc=0.1_3=r36h96ca727_4
r-bezier=1.1.2=r36h6115d3f_0
r-bh=1.69.0_1=r36h6115d3f_0
r-bigassertr=0.1.3=r36h6115d3f_0
r-bigmemory=4.5.36=r36h0357c0b_1
r-bigmemory.sri=0.1.3=r36h6115d3f_1004
r-bigparallelr=0.2.5=r36h6115d3f_0
r-bigstatsr=1.2.3=r36h29659fb_0
r-bit=1.1_14=r36h96ca727_0
r-bit64=0.9_7=r36h96ca727_0
r-bitops=1.0_6=r36h96ca727_4
r-blob=1.1.1=r36h6115d3f_0
r-boot=1.3_20=r36h6115d3f_0
r-broom=0.5.2=r36h6115d3f_0
r-calibrate=1.7.2=r36h6115d3f_0
r-callr=3.2.0=r36h6115d3f_0
r-car=3.0_2=r36h6115d3f_0
r-cardata=3.0_2=r36h6115d3f_0
r-cellranger=1.1.0=r36h6115d3f_0
r-checkmate=1.9.1=r36h96ca727_0
r-cli=1.1.0=r36h6115d3f_0
r-clipr=0.6.0=r36h6115d3f_0
r-clisymbols=1.2.0=r36h6115d3f_0
r-cluster=2.0.8=r36ha65eedd_0
r-codetools=0.2_16=r36h6115d3f_0
r-colorspace=1.4_1=r36h96ca727_0
r-combinat=0.0_8=r36h6115d3f_1003
r-cowplot=0.9.4=r36h6115d3f_0
r-crayon=1.3.4=r36h6115d3f_0
r-curl=3.3=r36h96ca727_0
r-data.table=1.12.2=r36h96ca727_0
r-dbi=1.0.0=r36h6115d3f_0
r-dbplyr=1.4.0=r36h6115d3f_0
r-desc=1.2.0=r36h6115d3f_0
r-desolve=1.24=r36ha65eedd_0
r-devtools=2.0.2=r36h6115d3f_0
r-dichromat=2.0_0=r36h6115d3f_4
r-digest=0.6.18=r36h96ca727_0
r-domc=1.3.7=r36hb0f4dca_0
r-doparallel=1.0.14=r36h6115d3f_0
r-dplyr=0.8.0.1=r36h29659fb_0
r-ellipsis=0.1.0=r36h96ca727_0
r-evaluate=0.13=r36h6115d3f_0
r-fansi=0.4.0=r36h96ca727_0
r-flock=0.7=r36h29659fb_0
r-forcats=0.4.0=r36h6115d3f_0
r-foreach=1.4.4=r36h6115d3f_0
r-foreign=0.8_71=r36h96ca727_0
r-formatr=1.6=r36h6115d3f_0
r-formula=1.2_3=r36h6115d3f_0
r-fs=1.2.7=r36h29659fb_0
r-futile.logger=1.4.3=r36h6115d3f_1003
r-futile.options=1.0.1=r36h6115d3f_0
r-generics=0.0.2=r36h6115d3f_0
r-ggplot2=3.1.1=r36h6115d3f_0
r-gh=1.0.1=r36h6115d3f_0
r-git2r=0.25.2=r36h96ca727_0
r-glue=1.3.1=r36h96ca727_0
r-gridextra=2.3=r36h6115d3f_0
r-gtable=0.3.0=r36h6115d3f_0
r-gwasexacthw=1.01=r36hcdcec82_1
r-gwidgets2=1.0_8=r36h6115d3f_1
r-gwidgets2tcltk=1.0_6=r36h6115d3f_1
r-haven=2.1.0=r36h29659fb_0
r-highr=0.8=r36h6115d3f_0
r-hmisc=4.2_0=r36ha65eedd_0
r-hms=0.4.2=r36h6115d3f_0
r-htmltable=1.13.1=r36h6115d3f_0
r-htmltools=0.3.6=r36h29659fb_0
r-htmlwidgets=1.3=r36h6115d3f_0
r-httr=1.4.0=r36h6115d3f_0
r-igraph=1.2.4.1=r36h80f5a37_0
r-ini=0.3.1=r36h6115d3f_0
r-irdisplay=0.7.0=r36h6115d3f_0
r-irkernel=0.8.15=r36_0
r-iterators=1.0.10=r36h6115d3f_0
r-jomo=2.7_1=r36hcdcec82_0
r-jsonlite=1.6=r36h96ca727_0
r-kernsmooth=2.23_15=r36ha65eedd_4
r-knitr=1.22=r36h6115d3f_0
r-labeling=0.3=r36h6115d3f_4
r-lambda.r=1.2.3=r36h6115d3f_0
r-lattice=0.20_38=r36h96ca727_0
r-latticeextra=0.6_28=r36h6115d3f_0
r-lazyeval=0.2.2=r36h96ca727_0
r-lme4=1.1_21=r36h29659fb_0
r-lmtest=0.9_36=r36ha65eedd_0
r-logistf=1.23=r36hcdcec82_2
r-magrittr=1.5=r36h6115d3f_4
r-maptools=0.9_5=r36h96ca727_0
r-markdown=0.9=r36h96ca727_0
r-mass=7.3_51.3=r36h96ca727_0
r-matrix=1.2_17=r36h96ca727_0
r-matrixmodels=0.4_1=r36h6115d3f_4
r-matrixstats=0.54.0=r36h96ca727_0
r-memoise=1.1.0=r36h6115d3f_0
r-mgcv=1.8_28=r36h96ca727_0
r-mice=3.9.0=r36h0357c0b_0
r-mime=0.6=r36h96ca727_0
r-minqa=1.2.4=r36h80f5a37_4
r-mitml=0.3_7=r36h6115d3f_2
r-multcompview=0.1_8=r36h6115d3f_1
r-munsell=0.5.0=r36h6115d3f_0
r-mvtnorm=1.0_10=r36ha65eedd_0
r-nlme=3.1_139=r36ha65eedd_0
r-nloptr=1.2.1=r36h80f5a37_0
r-nnet=7.3_12=r36h96ca727_0
r-numderiv=2016.8_1=r36h6115d3f_0
r-openssl=1.3=r36h96ca727_0
r-openxlsx=4.1.0=r36h29659fb_0
r-ordinal=2019.12_10=r36hcdcec82_1
r-pan=1.6=r36ha65eedd_0
r-pbdzmq=0.3_3=r36h5455479_1
r-pbkrtest=0.4_7=r36h6115d3f_0
r-performanceanalytics=2.0.4=r36hcdcec82_1
r-pillar=1.3.1=r36h6115d3f_0
r-pixmap=0.4_12=r36hc72bb7e_0
r-pkgbuild=1.0.3=r36h6115d3f_0
r-pkgconfig=2.0.2=r36h6115d3f_0
r-pkgload=1.0.2=r36h29659fb_0
r-plogr=0.2.0=r36h6115d3f_0
r-plotrix=3.7_6=r36h6115d3f_0
r-plyr=1.8.4=r36h29659fb_0
r-prettyunits=1.0.2=r36h6115d3f_0
r-processx=3.3.0=r36h96ca727_0
r-progress=1.2.0=r36h6115d3f_0
r-ps=1.3.0=r36h96ca727_0
r-purrr=0.3.2=r36h96ca727_0
r-qqman=0.1.4=r36h6115d3f_4
r-qrank=1.0=r36h6115d3f_0
r-quadprog=1.5_8=r36h9bbef5b_0
r-quantreg=5.38=r36ha65eedd_0
r-r.methodss3=1.8.0=r36h6115d3f_1
r-r.oo=1.23.0=r36h6115d3f_1
r-r.utils=2.9.2=r36h6115d3f_1
r-r6=2.4.0=r36h6115d3f_0
r-rappdirs=0.3.1=r36h96ca727_0
r-rcmdcheck=1.3.2=r36h6115d3f_0
r-rcolorbrewer=1.1_2=r36h6115d3f_0
r-rcpp=1.0.1=r36h29659fb_0
r-rcpparmadillo=0.9.300.2.0=r36h29659fb_0
r-rcppeigen=0.3.3.5.0=r36h29659fb_0
r-rcurl=1.95_4.12=r36h96ca727_0
r-readr=1.3.1=r36h29659fb_0
r-readxl=1.3.1=r36h29659fb_0
r-rematch=1.0.1=r36h6115d3f_0
r-remotes=2.0.4=r36h6115d3f_0
r-repr=0.19.2=r36h6115d3f_0
r-reshape2=1.4.3=r36h29659fb_0
r-rhpcblasctl=0.18_205=r36h96ca727_0
r-rio=0.5.16=r36h6115d3f_0
r-rjava=0.9_11=r36h96ca727_0
r-rlang=0.3.4=r36h96ca727_0
r-rmio=0.2.0=r36h6115d3f_0
r-rnomni=0.7.1=r36h29659fb_0
r-rpart=4.1_15=r36h96ca727_0
r-rprojroot=1.3_2=r36h6115d3f_0
r-rspectra=0.16_0=r36h29659fb_0
r-rsqlite=2.1.1=r36h29659fb_0
r-rstudioapi=0.10=r36h6115d3f_0
r-sandwich=2.5_1=r36h6115d3f_0
r-scales=1.0.0=r36h29659fb_0
r-scatterplot3d=0.3_41=r36h6115d3f_1003
r-seqminer=7.1=r36h29659fb_0
r-sessioninfo=1.1.1=r36h6115d3f_0
r-snow=0.4_3=r36h6115d3f_0
r-sp=1.3_1=r36h96ca727_0
r-sparsem=1.77=r36ha65eedd_0
r-statmod=1.4.34=r36h6e990d7_1
r-stringi=1.4.3=r36h29659fb_0
r-stringr=1.4.0=r36h6115d3f_0
r-survival=2.44_1.1=r36h96ca727_0
r-sys=3.2=r36h96ca727_0
r-tibble=2.1.1=r36h96ca727_0
r-tidyr=0.8.3=r36h29659fb_0
r-tidyselect=0.2.5=r36h29659fb_0
r-tkrplot=0.0_24=r36h96ca727_0
r-ucminf=1.1_4=r36ha65eedd_0
r-usethis=1.5.0=r36h6115d3f_0
r-utf8=1.1.4=r36h96ca727_0
r-uuid=0.1_2=r36h96ca727_4
r-viridis=0.5.1=r36h6115d3f_0
r-viridislite=0.3.0=r36h6115d3f_0
r-whisker=0.3_2=r36h6115d3f_4
r-withr=2.1.2=r36h6115d3f_0
r-xfun=0.6=r36h6115d3f_0
r-xlsx=0.6.5=r36hc72bb7e_0
r-xlsxjars=0.6.1=r36h6115d3f_3
r-xml=3.98_1.19=r36h96ca727_0
r-xopen=1.0.0=r36h6115d3f_0
r-xts=0.12.1=r36hcdcec82_0
r-yaml=2.2.0=r36h96ca727_0
r-zip=2.0.1=r36h96ca727_0
r-zoo=1.8_6=r36h96ca727_0
readline=8.0=h7b6447c_0
requests=2.25.1=pyhd3deb0d_0
rvtests=2.0.7=h3d151dd_2
scipy=1.5.0=py37h0b6359f_0
send2trash=1.8.0=pyhd8ed1ab_0
setuptools=49.1.0=py37_0
sip=4.19.8=py37hf484d3e_0
six=1.15.0=py_0
soupsieve=2.2.1=pyhd3eb1b0_0
sqlalchemy=1.3.5=py37h516909a_0
sqlite=3.32.3=h62c20be_0
tabix=0.2.6=ha92aebf_0
terminado=0.12.1=py37h89c1867_0
testpath=0.5.0=pyhd8ed1ab_0
tk=8.6.10=hbc83047_0
tktable=2.10=h14c3975_0
tornado=6.0.4=py37h7b6447c_1
tqdm=4.56.0=pyhd3eb1b0_0
traitlets=5.1.1=pyhd8ed1ab_0
typing_extensions=3.10.0.2=pyha770c72_0
ucsc-wigtobigwig=357=1
urllib3=1.26.4=pypi_0
wcwidth=0.2.5=pyh9f0ad1d_2
webencodings=0.5.1=py_1
wheel=0.34.2=py37_0
xz=5.2.5=h7b6447c_0
zeromq=4.3.4=h2531618_0
zipp=3.6.0=pyhd8ed1ab_0
zlib=1.2.11=h7b6447c_3
zstd=1.4.4=h0b5b093_3