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need a demo input file for test #8

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orangeSi opened this issue Aug 28, 2024 · 2 comments
Open

need a demo input file for test #8

orangeSi opened this issue Aug 28, 2024 · 2 comments

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@orangeSi
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Expected Behavior

provide a demo input file for foldmason to test it.

Current Behavior

have no a demo input file for foldmason to test it.
https://search.foldseek.com/foldmason had demo output instead of demo input.

Thanks!
Si

@gamcil
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gamcil commented Aug 29, 2024

Hi Si, are you wanting example structures to use on the webserver itself, or locally? Currently we use the example structures from Foldseek for local demos (https://github.com/steineggerlab/foldmason/tree/main/lib/foldseek/example, available in Foldmason as e.g. ./lib/foldseek/example/d*), but we could definitely make that clearer on the repository/server.

@orangeSi
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Thanks, gamcil~ I upload https://github.com/steineggerlab/foldmason/blob/main/lib/foldseek/example/1tim.pdb.gz (have two chain) to foldmason web server as input, it works well~ And if add this pdb file path to README.md as demo input will make more clear for new user like me ~

And I also want to know whether https://search.foldseek.com/foldmason support upload more than one pdb files as input instead of only one pdb file(had more than one chains)? because I upload multiple pdb files, but https://search.foldseek.com/foldmason only keep one file.

Thanks!
Si

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