Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

overall module goals #2

Open
bradfordcondon opened this issue Feb 23, 2018 · 0 comments
Open

overall module goals #2

bradfordcondon opened this issue Feb 23, 2018 · 0 comments
Labels
Discussion just knocking around ideas

Comments

@bradfordcondon
Copy link
Contributor

bradfordcondon commented Feb 23, 2018

Converter

  • User would select a base table from a list of base table with baseprop tables.
  • See a table of CVs, by count, in this prop table.
  • let's users quickly triage properties that are in, for example, local or module_name CVs
  • User could optionally select a CV to filter by
  • returns a table of property CVterms. Would also display text values, cvalues associated iwth that property, if reasonable.
  • User can click on a property to reassign all properties. For example, 100 biosamples with the local:tissue property could be reassigned to plant_trait_ontology:tissue
  • Similarly, batch conversion of TEXT VALUES and assignment of cvalues.
  • So, selecting destination cvterm. We could use one of the existing cvterm interfaces that is in core. It would be exciting to get elasticsearch integration instead.

Health

This could be tied to the ontology browser. Would want to display what % of base table entities have properties, and how many. And then, how many of those properties are from "good" CVs, how many of the properties have cvalue_id's instead of text values set.

Keep in mind individual entities can be very easily retagged in terms of properties: we are thinking about batch improvement/streamlined interface as opposed to making a list of all your biosamples and clicking through them.

@bradfordcondon bradfordcondon added the Discussion just knocking around ideas label Feb 28, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Discussion just knocking around ideas
Projects
None yet
Development

No branches or pull requests

1 participant