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settings_personalization.xml
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settings_personalization.xml
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<?xml version="1.0"?>
<data>
<!--path to the folder the scaled model with default constraints is stored-->
<folder_model_input>path/to/folder/</folder_model_input>
<!--filename of the scaled model with default constraints (including '.osim')-->
<filename_model_input>model_scaled.osim</filename_model_input>
<!--path to the folder the personalized model will be stored-->
<folder_model_output>path/to/folder/</folder_model_output>
<!--filename the personalized model will be saved as (including '.osim')-->
<filename_model_output>model_personalized.osim</filename_model_output>
<!--OpenSim model name-->
<model_output_name>personalized_model</model_output_name>
<!--folder in which all .trc marker files are stored-->
<folder_trc>path/to/folder/</folder_trc>
<!--filenames of the five marker data files used for the personalization of the scapulohumeral rhythm of the right shoulder-->
<filenames_calibration_right>
<abd0>right_abd_0.trc</abd0>
<abd180>right_abd_180.trc</abd180>
<flex180>right_flex_180.trc</flex180>
<horiz_abd>right_horiz_abd.trc</horiz_abd>
<horiz_add>right_horiz_add.trc</horiz_add>
</filenames_calibration_right>
<!--filenames of the five marker data files used for the personalization of the scapulohumeral rhythm of the left shoulder-->
<filenames_calibration_left>
<abd0>left_abd_0.trc</abd0>
<abd180>left_abd_180.trc</abd180>
<flex180>left_flex_180.trc</flex180>
<horiz_abd>left_horiz_abd.trc</horiz_abd>
<horiz_add>left_horiz_add.trc</horiz_add>
</filenames_calibration_left>
<!--names of the upper body markers in your study protocol.-->
<marker_names>
<IJ>Sternum</IJ>
<C7>C7</C7>
<PX>PX</PX>
<T8>T8</T8>
<TS_r>ts_r</TS_r>
<AI_r>ai_r</AI_r>
<AA_r>aa_r</AA_r>
<EL_r>r_elbow_lateral</EL_r>
<EM_r>r_elbow_medial</EM_r>
<upperarm_tracking_marker_r>r_humerous</upperarm_tracking_marker_r>
<TS_l>ts_l</TS_l>
<AI_l>ai_l</AI_l>
<AA_l>aa_l</AA_l>
<EL_l>l_elbow_lateral</EL_l>
<EM_l>l_elbow_medial</EM_l>
<upperarm_tracking_marker_l>l_humerous</upperarm_tracking_marker_l>
</marker_names>
<!--flag indicating if a model with personalized constraints but with unconstrained clavicle elevation should be created-->
<create_clavicle_elevation_model>True</create_clavicle_elevation_model>
<!--filename of the model with personalized constraints but with unconstrained clavicle elevation; only needed if flag above is set to True-->
<filename_model_clav_output>model_personalized_clavicle.osim</filename_model_clav_output>
<!--flag indicating if your palpated and measured scapula markers need to be moved from the scapula locator L-frame tool onto the skin.
This needs to be true if the locator had pins that were placed on the skin locations but led to the measured markers being at a small distance from the skin. -->
<move_scapula_markers_to_skin>True</move_scapula_markers_to_skin>
<!--In your scapula locator L-Frame: distance from skin to bottom of markers; only needed if flag above is set to True-->
<scapula_distance>57</scapula_distance>
<!--In your scapula locator L-Frame: names of the markers on the locator, can be the same or different from the marker names defined above; only needed if flag above is set to True-->
<marker_names_scapula_tool>
<AA>AA</AA>
<AI>AI</AI>
<TS>TS</TS>
</marker_names_scapula_tool>
<!--flag indicating if coordinate ranges should be extended (for overhead sports analysis)-->
<extend_coordinate_ranges>True</extend_coordinate_ranges>
</data>