From 27cb0f794dc0c127ba5a4a60dd3cd5596dcc01fe Mon Sep 17 00:00:00 2001
From: srikash <kashyap.sriranga@gmail.com>
Date: Mon, 22 Mar 2021 11:15:40 +0100
Subject: [PATCH] alt spelling script

---
 3dMPRAGEize | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/3dMPRAGEize b/3dMPRAGEize
index 15e9a1c..a43d2cc 100755
--- a/3dMPRAGEize
+++ b/3dMPRAGEize
@@ -111,12 +111,16 @@ if [ "$re_bias" = 0 ]; then
     -overwrite \
     -prefix ${inv2_basename}_bfc.nii \
     $inv2_image
+
+    out_name=${uni_basename}_unbiased_clean.nii
     
 else
     echo ""
     echo "++ Reintroducing bias-field."
     echo ""
     3dcopy $inv2_image ${inv2_basename}_bfc.nii
+
+    out_name=${uni_basename}_rebiased_clean.nii
     
 fi
 
@@ -138,7 +142,7 @@ echo ""
 -a $uni_image \
 -b ${inv2_basename}_intnorm.nii \
 -expr "a * b" \
--prefix ${uni_basename}_unbiased_clean.nii
+-prefix $out_name
 
 # Remove intermediate files
 rm ${inv2_basename}_bfc.nii ${inv2_basename}_intnorm.nii