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This repository has been archived by the owner on Jan 24, 2024. It is now read-only.
Hello,
I am following the comparing dataset vignette on cellchat v2. When I try to apply the function netAnalysis_signalingChanges_scatter I have an error "$<-.data.frame(tmp`, "specificity", value = 0) : replacement has 1 rows, data has 0"
I had to go inside the function code. In line 73 of the function, there is: mat1 <- mat[rownames(mat) %in% signaling, , drop = FALSE]
The rownames of "mat" are not fitting the "signaling" function print(signaling) print(rownames(mat)
All of this is resulting into an empty intermediate matrix and thus the function can not go further. Still investigating
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Hello,
I am following the comparing dataset vignette on cellchat v2. When I try to apply the function netAnalysis_signalingChanges_scatter I have an error "$<-.data.frame
(
tmp`, "specificity", value = 0) : replacement has 1 rows, data has 0"Here is the command I used:
g1 <- netAnalysis_signalingChanges_scatter(cellchat, idents.use = "NK")
I have only two conditions in my merged cellchat object as in the tutorial and "NK" is indeed present in the cellchat@idents$joint
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