Whether fsc ignores monomorphic sites or does not

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Hello,

When I was using fsc to simulate my data, I struggled with whether to use monomorphic sites for simulation. I see that you used the -0 parameter when running fsc(https://speciationgenomics.github.io/fastsimcoal2/), but I read the fsc documentation saying that you need to fix the parameters on the .est file when using the -0 parameter, and I went to see your est file and did not find the specified parameter(https://github.com/speciationgenomics/data/blob/master/diff_geneflow.est). Can you please tell me why?

Thank you.

Best wishes!