DESCRIPTION

Package: spatPomp
Type: Package
Title: Inference for Spatiotemporal Partially Observed Markov Processes
Version: 1.0.0
Date: 2024-11-08
Authors@R: c(
  person("Kidus", "Asfaw", email = "kidusasfaw1990@gmail.com", role = c("aut")),
  person("Edward", "Ionides", email = "ionides@umich.edu",role = c("cre","aut")),
  person("Aaron A.", "King", email = "kingaa@umich.edu", role = c("aut")),
  person("Allister", "Ho", email = "allistho@umich.edu", role = c("ctb")),
  person("Joonha", "Park", email = "j.park@ku.edu", role = c("ctb")),
  person("Jesse", "Wheeler", email = "jeswheel@umich.edu", role = c("ctb")),
  person("Jifan", "Li", email = "jifanli@umich.edu", role = c("ctb")),
  person("Ning", "Ning", email = "patning@tamu.edu", role = c("ctb")),
  person("Haogao", "Gu", email = "hggu@connect.hku.hk", role = c("ctb")))
URL: https://github.com/spatPomp-org/spatPomp
Description: Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. The 'spatPomp' package extends 'pomp' to include algorithms taking advantage of the spatial structure in order to assist with handling high dimensional processes. See Asfaw et al. (2024) <doi:10.48550/arXiv.2101.01157> for further description of the package.
SystemRequirements: For Windows users, Rtools (see https://cran.r-project.org/bin/windows/Rtools/).
License: GPL-3
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/spatPomp-org/spatPomp/issues/
Depends: pomp (>= 5.4), R(>= 4.1), methods
LinkingTo: pomp
Suggests: doParallel (>= 1.0.11), parallel, doRNG
Imports: foreach, dplyr, tidyr, stringr, abind, rlang, ggplot2
Collate:
    'spatPomp_class.R'
    'abf.R'
    'abfir.R'
    'arma_benchmark.R'
    'get_covariate_names.R'
    'as_data_frame.R'
    'bm.R'
    'bm2.R'
    'bm2_kalman_logLik.R'
    'bm_kalman_logLik.R'
    'bpfilter.R'
    'city_data_UK.R'
    'iter_filter.R'
    'safecall.R'
    'pstop.R'
    'undefined.R'
    'spatPomp.R'
    'ibpf.R'
    'listie.R'
    'conc.R'
    'concat.R'
    'dunit_measure.R'
    'enkf.R'
    'eunit_measure.R'
    'gbm.R'
    'girf.R'
    'he10.R'
    'he10coordinates.R'
    'he10demography.R'
    'he10measles.R'
    'he10mle.R'
    'ienkf.R'
    'igirf.R'
    'init.R'
    'iubf.R'
    'loglik.R'
    'lorenz.R'
    'measles.R'
    'measles2.R'
    'measlesUK.R'
    'munit_measure.R'
    'package.R'
    'param_formats.R'
    'plot.R'
    'print.R'
    'runit_measure.R'
    'simulate.R'
    'spatPomp_Csnippet.R'
    'spatPomp_workhorses.R'
    'unit_names.R'
    'vec_dmeasure.R'
    'vec_rmeasure.R'
    'vunit_measure.R'
RoxygenNote: 7.3.2