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only allows direct dna or protein sketching, not translation.
input csv requires columns: name,genome_filename,protein_filename, which is fantastic for building databases and less fantastic for sketching metagenomes if you want to use both R1/R2 reads without concatenating files.
Note, this mirrors sourmash sketch fromfile template/limitations.
Here, we could try allowing an alternate fromfile input format with columns name,read1,read2 by checking this option if name,genome_filename,protein_filename header is not found or if the user provides some flag. Could we allow translate as a parameter option, too?
The text was updated successfully, but these errors were encountered:
current
manysketch
:dna
orprotein
sketching, not translation.name,genome_filename,protein_filename
, which is fantastic for building databases and less fantastic for sketching metagenomes if you want to use both R1/R2 reads without concatenating files.Note, this mirrors
sourmash sketch fromfile
template/limitations.Here, we could try allowing an alternate
fromfile
input format with columnsname,read1,read2
by checking this option ifname,genome_filename,protein_filename
header is not found or if the user provides some flag. Could we allowtranslate
as a parameter option, too?The text was updated successfully, but these errors were encountered: