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command.txt
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command.txt
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;-----------------------------------------------------;
; Lindsay's CAL scripts, including CdTe updates ;
;-----------------------------------------------------;
; I replaced any call to the function image.pro by a call to the function foxsi_image.pro
; since I am changing this function name in calsoft (because image.pro is already a default IDL function that I use elsewhere in calsoft) - Sophie
add_path,'../calsoft_linz/'
add_path,'../util/'
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
; Data processing / quicklook;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; USB interface
dir = '../20120825/'
f='data_20120825_210804.txt'
data = read_data_struct_cal(dir+f)
str = 'struct_'+f
save,data,file=str
h2=makehist(str,/cmn_med)
draw_4hist,h2,xrange=[0,100],yr=[0,2]
h1=makehist('struct_data_20120819_010034_det110_am1.txt',/cmn_med)
draw_4hist,h1,xrange=[0,500],yr=[0,5]
;; formatter interface
dir = '~/FOXSI-calib/20141109/'
f = 'data_141109_204241.dat'
detnum=2
data=formatter_packet(dir+f,detnum)
str = 'struct_D'+strtrim(detnum,2)+'_'+f
save,data,file=str
h=makehist(str,/sub)
draw_4hist,h,xrange=[0,150],yr=[0,2]
badch=intarr(4,64)
badch[2,63]=1
badch[3, 0]=1
image=image_quick(str, badch=badch)
draw_image,-image
loadct,0
; for the CdTe.
dir = '~/FOXSI-calib/20141109/'
f = 'data_141109_204241.dat'
detnum=2
str = 'struct_D'+strtrim(detnum,2)+'_'+f
image=image_quick_cdte(str, badch=badch)
draw_image, -image, nmin=-0.125*max(image)
loadct,0
; look at it in payload coordinates.
add_path,'../calsoft_linz/'
add_path,'../util/'
.compile cal_data_to_level0
.compile foxsi_level0_to_level1
.compile foxsi_level1_to_level2
.compile get_payload_coords
dir = '~/FOXSI-calib/20141109/'
f = 'data_141109_204127.dat' ; unperturbed source location
f = 'data_141109_205747.dat' ; source displaced to solar north
f = 'data_141109_211620.dat' ; source displaced to solar west
detnum=2
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data_lvl0_d2 = formatter_data_to_level0( f, det=2 )
save, data_lvl0_d2, file = 'level0_'+f+'.sav'
data_lvl1_D2 = foxsi_level0_to_level1_cdte( 'level0_'+f+'.sav', det=2, /ground )
save, data_lvl1_D2, file = 'level1_'+f+'.sav'
cal2 = '../calsoft_linz/peaks_det108.sav'
data_lvl2_D2 = foxsi_level1_to_level2( 'level0_'+f+'.sav', 'level1_'+f+'.sav', det=2, $
calib=cal2, /ground )
save, data_lvl2_D2, file = 'level2_'+f+'.sav'
im = foxsi_image_det( data_lvl2_d2, trange=[-1,1]-long(64500.) )
map = rot_map( make_map( im, dx=7.78, dy=7.78 ), rot2 )
plot_map, map, /log
rot0 = 82.5
rot1 = 75.
rot2 = -67.5 - 90
rot3 = -75.
rot4 = 97.5
rot5 = 90.
rot6 = -60.
; process all the X-ray alignment data.
dir = '~/FOXSI-calib/20141109/'
detnum=0
f = 'data_141109_195208.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_195638.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
detnum=1
f = 'data_141109_182413.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_182536.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_182838.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_183437.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
detnum=2
f = 'data_141109_204127.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_204241.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_204320.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
detnum=3
f = 'data_141109_203311.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_203442.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
detnum=4
f = 'data_141109_202422.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_202557.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
detnum=5
f = 'data_141109_201310.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_201558.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_201850.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
detnum=6
f = 'data_141109_172229.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
f = 'data_141109_172816.dat'
str = 'struct_D'+strtrim(detnum,2)+'_'+f
data=formatter_packet(dir+f,detnum)
save,data,file=str
badch=intarr(4,64)
badch[2,63]=1
badch[3, 0]=1
det = 2
str = file_search('*D'+strtrim(det,2)+'*')
.r
for i=0, n_elements(str)-1 do begin
if i eq 0 then image = image_quick(str[i], badch=badch) $
else image = image + image_quick(str[i], badch=badch)
endfor
end
draw_image,-image, charsi=1.5, charth=2, nmax=-50, $
title = 'FOXSI-2 X-ray alignment 2014 Nov 9 Detector '+strtrim(det,2)
loadct,0
dir = '../20120827/'
f=file_search(dir+'data*det3_*am*')
print,f
data = read_data_struct_cal_c(dir+f[0])
str = 'struct_'+strmid(f[0],strpos(f[0],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[1])
str = 'struct_'+strmid(f[1],strpos(f[1],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[2])
str = 'struct_'+strmid(f[2],strpos(f[2],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[3])
str = 'struct_'+strmid(f[3],strpos(f[3],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[4])
str = 'struct_'+strmid(f[4],strpos(f[4],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[5])
str = 'struct_'+strmid(f[5],strpos(f[5],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[6])
str = 'struct_'+strmid(f[6],strpos(f[6],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[7])
str = 'struct_'+strmid(f[7],strpos(f[7],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[8])
str = 'struct_'+strmid(f[8],strpos(f[8],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[9])
str = 'struct_'+strmid(f[9],strpos(f[9],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[10])
str = 'struct_'+strmid(f[10],strpos(f[10],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[11])
str = 'struct_'+strmid(f[11],strpos(f[11],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[12])
str = 'struct_'+strmid(f[12],strpos(f[12],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[13])
str = 'struct_'+strmid(f[13],strpos(f[13],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[14])
str = 'struct_'+strmid(f[14],strpos(f[14],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[15])
str = 'struct_'+strmid(f[15],strpos(f[15],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[16])
str = 'struct_'+strmid(f[16],strpos(f[16],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[17])
str = 'struct_'+strmid(f[17],strpos(f[17],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[18])
str = 'struct_'+strmid(f[18],strpos(f[18],'/',/reverse_search)+1)
save,data,file=str
data = read_data_struct_cal_c(dir+f[19])
str = 'struct_'+strmid(f[19],strpos(f[19],'/',/reverse_search)+1)
save,data,file=str
;;;;;;;;;;
; Images ;
;;;;;;;;;;
badch=intarr(4,64)
badch[2,63]=1
badch[3, 0]=1
image=image_quick(str, badch=badch)
draw_image,-image
loadct,0
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;; make response functions and calibrated spectra
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
add_path,'../calsoft_linz/'
f=file_search('struct*det3_*am*')
print,f
h_am1=makehist(f[0], /cmn_med)
h_am2=makehist(f[1], /cmn_med)
h_am3=makehist(f[2], /cmn_med)
h_am4=makehist(f[3], /cmn_med)
h_am5=makehist(f[4], /cmn_med)
h_am6=makehist(f[5], /cmn_med)
h_am7=makehist(f[6], /cmn_med)
h_am = add4hist(h_am1,h_am2,h_am3,h_am4)
h_am = addhist(h_am, h_am5)
h_am = addhist(h_am, h_am6)
h_am = addhist(h_am, h_am7)
draw_4hist, h_am, xrange=[0,1000], yr=[0,30]
f=file_search('struct*det3_*ba*')
print,f
h_ba1=makehist(f[0], /cmn_med)
h_ba2=makehist(f[1], /cmn_med)
h_ba3=makehist(f[2], /cmn_med)
h_ba4=makehist(f[3], /cmn_med)
h_ba=addhist(h_ba1, h_ba2)
h_ba=addhist(h_ba, h_ba3)
h_ba=addhist(h_ba, h_ba4)
draw_4hist, h_ba, xrange=[0,1000], yr=[0,30]
f=file_search('struct*det3_*fe*')
print,f
h_fe1=makehist(f[0],/cmn_median)
h_fe2=makehist(f[1],/cmn_median)
h_fe3=makehist(f[2],/cmn_median)
h_fe=addhist(h_fe1, h_fe2)
h_fe=addhist(h_fe, h_fe3)
draw_4hist, h_fe, xrange=[0,100], yr=[0,30]
.compile peaks_fe_4am_2ba
peaks_fe_4am_2ba, histfe=h_fe, histam=h_am, histba=h_ba
restore,'peaks.sav'
draw_64spline,peaks,0
add_path,'../calsoft_linz/'
badch=intarr(4,64)
badch[2,63]=1
badch[3, 0]=1
f=file_search('struct*det3_*am*')
print,f
spec=calspec(f[0],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[0],strpos(f[0],'_'))
spec=calspec(f[1],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[1],strpos(f[1],'_'))
spec=calspec(f[2],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[2],strpos(f[2],'_'))
spec=calspec(f[3],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[3],strpos(f[3],'_'))
spec=calspec(f[4],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[4],strpos(f[4],'_'))
spec=calspec(f[5],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[5],strpos(f[5],'_'))
amf=file_search('spec*am*')
print,amf
restore,amf[0]
spec_am=spec
restore,amf[1]
spec_am=addspec(spec_am, spec)
restore,amf[2]
spec_am=addspec(spec_am, spec)
restore,amf[3]
spec_am=addspec(spec_am, spec)
restore,amf[4]
spec_am=addspec(spec_am, spec)
restore,amf[5]
spec_am=addspec(spec_am, spec)
restore,amf[6]
spec_am=addspec(spec_am, spec)
spec=spec_am
save,spec,file='spec_data_det3_am.dat'
f=file_search('struct*det3_*ba*')
spec=calspec(f[0],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[0],strpos(f[0],'_'))
spec=calspec(f[1],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[1],strpos(f[1],'_'))
spec=calspec(f[2],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[2],strpos(f[2],'_'))
spec=calspec(f[3],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[3],strpos(f[3],'_'))
baf=file_search('spec*ba*')
print,baf
restore,baf[0]
spec_ba=spec
restore,baf[1]
spec_ba=addspec(spec_ba, spec)
restore,baf[2]
spec_ba=addspec(spec_ba, spec)
restore,baf[3]
spec_ba=addspec(spec_ba, spec)
restore,baf[4]
spec_ba=addspec(spec_ba, spec)
spec = spec_ba
save,spec,file='spec_data_det3_ba.dat'
f=file_search('struct*det3_*fe*')
spec=calspec(f[0],/cmn_median,badch=badch,thrn=4)
save,spec,file='spec' + strmid(f[0],strpos(f[0],'_'))
fef=file_search('spec*fe*')
print,fef
restore, fef[0]
spec_fe = spec
restore, fef[1]
spec_fe = addspec(spec_fe, spec)
restore, fef[2]
spec_fe = addspec(spec_fe, spec)
spec = spec_fe
save,spec,file='spec_data_det3_fe.dat'
add_path,'../calsoft_linz/'
add_path,'../util/'
restore,'spec_data_det3_am.dat'
draw_4spec, spec, xr=[0,80], ymin=0;, yr=[0,30000]
print, calcfwhm(spec, asic=2, ch=64, range=[13,15], rebin=1)
print, calcfwhm(spec, asic=3, ch=64, range=[13,15], rebin=1)
popen, xsize=8, ysize=6
draw_4spec, spec, xr=[0,80], ystyle=1, ymin=0.
pclose
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;; count rate scan and efficiency estimation
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
add_path,'../calsoft_linz/'
add_path,'../util/'
badch=intarr(4,64)
badch[2,63]=1
badch[3, 0]=1
; ASIC 2
vth=[5.,6.,7.,8.,9.,10.,11.,12.,13.,14.,15.,16.,17.,18.,19.,20.,21.,22.,23.]
files = file_search('./struct*det3_asic2_vth*')
efficiency, vth=vth, files=files, badch=badch, savefile='efficiency_det3_asic2.sav'
; ASIC 3
vth=[6.,7.,8.,9.,10.,11.,12.,13.,14.,15.,16.,17.,18.,19.,20.,21.,22.,23.]
files = file_search('./struct*det3_asic3_vth*')
efficiency, vth=vth, files=files, badch=badch, savefile='efficiency_det3_asic3.sav'
popen, xsize=8, ysize=4
restore, 'efficiency_det3_asic2.sav'
plot, energy_kev, efficiency, xtitle='Energy [keV]', ytitle='Efficiency', charsize=1.2
restore, 'efficiency_det3_asic3.sav'
oplot, energy_kev, efficiency, line=1
legend, ['ASIC 2','ASIC 3'], line=[0,1], charsize=1.2
pclose
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
restore,'/home/ishikawa/foxsi/det16/spec_data_20111113_fe.dat'
print,calcfwhm(spec,asic=0,ch=64,range=[12,17],rebin=4)
print,calcfwhm(spec,asic=1,ch=64,range=[13,15],rebin=4)
print,calcfwhm(spec,asic=2,ch=64,range=[13.5,14.3],rebin=1)
print,calcfwhm(spec,asic=3,ch=64,range=[13,15],rebin=1)
print,calcfwhm(spec,asic=3,ch=64,range=[17.4,18.5],rebin=1)
print,calcfwhm(spec,asic=3,ch=64,range=[4,7.5],rebin=1)
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; image
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
add_path,'../calsoft/'
badch=intarr(4,64)
badch[2,62]=1
badch[2,63]=1
badch[3, 0]=1
badch[3, 1]=1
img1=foxsi_image('struct_data_20120104_204439.dat',/cmn_median,badch=badch,thrp=4,erange=[10,20])
img2=foxsi_image('struct_data_20120104_182223.dat',/cmn_median,badch=badch,thrp=4,erange=[4,50])
img3=foxsi_image('struct_data_20120104_182002.dat',/cmn_median,badch=badch,thrp=4,erange=[4,50])
img4=foxsi_image('struct_data_20120104_180336.dat',/cmn_median,badch=badch,thrp=4,erange=[4,50])
img5=foxsi_image('struct_data_20120104_175005.dat',/cmn_median,badch=badch,thrp=4,erange=[4,50])
img6=foxsi_image('struct_data_20120104_174336.dat',/cmn_median,badch=badch,thrp=4,erange=[4,50])
img7=foxsi_image('struct_data_20120104_173958.dat',/cmn_median,badch=badch,thrp=4,erange=[4,50])
image=img1+img2+img3
save,image,file='image_data_20120103_am.dat'
draw_image,image
restore,'image_data_20111209_194424_am_image_roomtemp.dat'
image1=img
restore,'image_data_20111209_195921_am_image_roomtemp_2.dat'
image2=img
image=image1+image2
draw_image,image
restore,'image_20111118_007.dat'
image7=img
restore,'image_20111118_008.dat'
image8=img
restore,'image_20111118_009.dat'
image9=img
image=image7+image8+image9
draw_image,image
restore,'image_20111117_003.dat'
image3=img
image=image1+image2+image3
draw_image,image
restore,'image_20111116_002_low.dat'
image1=img
restore,'image_20111116_003_low.dat'
image2=img
image=image1+image2
draw_image,image<35
img=foxsi_image('20111013_003_newstruct.dat',/cmn_median,badch=badch,thrp=4,erange=[4,100])
save,img,file='image_20111013_003_fe.dat'
draw_image,img
img=foxsi_image('20111013_004_newstruct.dat',/cmn_median,badch=badch,thrp=4,erange=[4,50])
save,img,file='image_20111013_004_am_4_50kev.dat'
draw_image,img
img=foxsi_image('20111013_004_newstruct.dat',/cmn_median,badch=badch,thrp=4,erange=[50,100])
save,img,file='image_20111013_004_am_50_100kev.dat'
draw_image,img
img=foxsi_image('20111013_004_newstruct.dat',/cmn_median,badch=badch,thrp=4,erange=[4,14.5])
save,img,file='image_20111013_004_am_4_14_5kev.dat'
draw_image,img
img=foxsi_image('20111013_004_newstruct.dat',/cmn_median,badch=badch,thrp=4,erange=[14.5,50])
save,img,file='image_20111013_004_am_14_5_50kev.dat'
draw_image,img
;;;;;;;;;;;;;
mistake probablity
;;;;;;;;;;;;;
wasteprob=1-gaussint(5-findgen(11)*0.5)
missprob=[0.236422,0.235775,0.233993,0.229588,0.219751,0.199739,0.163160,0.110493,0.0594266,0.0258672,0.00946134]
missprob_abs=(1-wasteprob)*missprob
plot,findgen(11)*0.5,wasteprob
oplot,findgen(11)*0.5,missprob_abs
oplot,findgen(11)*0.5,missprob_abs+wasteprob,linestyle=2
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
; Calculting FWHM for Gaussian pedestals ;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
det1=makehist('struct_data_20120130_130955.dat')
det1cms=makehist('struct_data_20120130_130955.dat',/cmn_median)
fwhm,hist=det1
fwhm,hist=det1cms
hist=det1
asic=0
xx0=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 0)
yy0=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 1)
result=gaussfit(xx0,yy0,coeff0)
fwhm0=2.35*coeff0[2]
asic=1
xx1=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 0)
yy1=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 1)
result=gaussfit(xx1,yy1,coeff1)
fwhm1=2.35*coeff1[2]
asic=2
xx2=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 0)
yy2=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 1)
result=gaussfit(xx2,yy2,coeff2)
fwhm2=2.35*coeff2[2]
asic=3
xx3=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 0)
yy3=(rebin(hist, 1124, 1, 4, 2))(*, 0, asic, 1)
result=gaussfit(xx3,yy3,coeff3)
fwhm3=2.35*coeff3[2]
print,fwhm0,fwhm1,fwhm2,fwhm3
popen,xsize=6,ysize=5
draw_4hist,h1,xrange=[0,100],yr=[0,50],/nowindow
pclose