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Convert to CodeMeta using cffconvert - codemeta = _convert_cff_to_codemeta(cff_data) - ctx.update_from(codemeta, local_path=str(cff_file)) + codemeta_dict = _convert_cff_to_codemeta(cff_data) + # TODO Replace the following temp patch for #112 once there is a new cffconvert version with cffconvert#309 + codemeta_dict = _patch_author_emails(cff_dict, codemeta_dict) + ctx.update_from(codemeta_dict, local_path=str(cff_file)) def _load_cff_from_file(cff_data: str) -> t.Any: @@ -74,8 +76,17 @@ def _load_cff_from_file(cff_data: str) -> t.Any: return yaml.load(cff_data) +def _patch_author_emails(cff: dict, codemeta: dict) -> dict: + cff_authors = cff["authors"] + for i, author in enumerate(cff_authors): + if "email" in author: + codemeta["author"][i]["email"] = author["email"] + return codemeta + + def _convert_cff_to_codemeta(cff_data: str) -> t.Any: codemeta_str = Citation(cff_data).as_codemeta() + return json.loads(codemeta_str) diff --git a/test/hermes_test/commands/harvest/test_cff.py b/test/hermes_test/commands/harvest/test_cff.py index ca00e238..88120756 100644 --- a/test/hermes_test/commands/harvest/test_cff.py +++ b/test/hermes_test/commands/harvest/test_cff.py @@ -69,19 +69,34 @@ def test_validate_fail(): # Regression test for https://github.com/hermes-hmc/workflow/issues/112 @pytest.fixture -def codemeta_with_email(): - return json.loads("""{ +def codemeta_without_email(): + return { "@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "author": [ { "@type": "Person", - "email": "email@example.com", "familyName": "Author" + }, + { + "@type": "Person", + "familyName": "Second" + }, + { + "@type": "Person", + "familyName": "Third" } ], "name": "Title" - }""") + } + + +@pytest.fixture +def codemeta_with_email(codemeta_without_email): + author_emails = {"Author": "email@example.com", "Second": "email2@example.com", "Third": "email3@example.com"} + for author in codemeta_without_email["author"]: + author["email"] = author_emails[author["familyName"]] + return codemeta_without_email @pytest.fixture @@ -91,16 +106,17 @@ def valid_minimal_cff_with_email(tmp_path): authors: - family-names: Author email: email@example.com + - family-names: Second + email: email2@example.com + - family-names: Third + email: email3@example.com message: Message title: Title """ yaml = YAML() - cff_yml = yaml.load(cff) - cff_file = tmp_path / 'CITATION.cff' - yaml.dump(cff_yml, cff_file) - return cff_file + return yaml.load(cff) def test_convert_cff_to_codemeta_with_email(valid_minimal_cff_with_email, codemeta_with_email): - actual_result = harvest._convert_cff_to_codemeta(valid_minimal_cff_with_email.read_text()) + actual_result = harvest._patch_author_emails(valid_minimal_cff_with_email, codemeta_with_email) assert codemeta_with_email == actual_result