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smith-chem-wisc · Nov 4, 2024 · cef3bb3 · cef3bb3
1 parent 70705b4
commit cef3bb3
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Showing 3 changed files with 1 addition and 3 deletions.
diff --git a/MetaMorpheus/Test/PostSearchAnalysisTaskTests.cs b/MetaMorpheus/Test/PostSearchAnalysisTaskTests.cs
@@ -172,7 +172,6 @@ public static void AllResultTxtContainsCorrectNumberOfResultLines(EverythingRunn
         [TestCaseSource(nameof(GetTestCases))]
         public static void CorrectFilesAreWrittenWithCorrectName(EverythingRunnerEngineTestCases testCaseIdentifier)
         {
-
             var testCase = EverythingRunnerEngineTestCase.GetTestCase(testCaseIdentifier);
             var psmFiles = Directory.GetFiles(testCase.OutputDirectory, "*PSMs.psmtsv", SearchOption.AllDirectories);
             var pepXmlFiles = Directory.GetFiles(testCase.OutputDirectory, "*.pep.xml", SearchOption.AllDirectories);

diff --git a/MetaMorpheus/Test/ProteinGroupTest.cs b/MetaMorpheus/Test/ProteinGroupTest.cs
@@ -208,7 +208,6 @@ public static void TestModificationInfoListInProteinGroupsOutput()
             string fastaName = @"TestData\DbForPrunedDb.fasta";
             string outputFolder = Path.Combine(TestContext.CurrentContext.TestDirectory, @"TestPrunedGeneration");
 
-
             var engine = new EverythingRunnerEngine(taskList, new List<string> { mzmlName }, new List<DbForTask> { new DbForTask(fastaName, false) }, outputFolder);
             engine.Run();
             string final = Path.Combine(MySetUpClass.outputFolder, "task2", "DbForPrunedDbGPTMDproteinPruned.xml");

diff --git a/MetaMorpheus/Test/SearchEngineTests.cs b/MetaMorpheus/Test/SearchEngineTests.cs
@@ -556,7 +556,7 @@ public static void TestModernSearchEngineLowResOneRealSpectrum()
 
             List<(string fileName, CommonParameters fileSpecificParameters)> fsp = new List<(string fileName, CommonParameters fileSpecificParameters)> { ("filename", CommonParameters) };
 
-            EngineLayer.FdrAnalysis.FdrAnalysisResults fdrResultsModernDelta = (EngineLayer.FdrAnalysis.FdrAnalysisResults)(new EngineLayer.FdrAnalysis.FdrAnalysisEngine(nonNullPsms, 1, CommonParameters, fsp, new List<string>()).Run());
+            FdrAnalysisResults fdrResultsModernDelta = (FdrAnalysisResults)(new FdrAnalysisEngine(nonNullPsms, 1, CommonParameters, fsp, new List<string>()).Run());
 
             // Single search mode
             Assert.AreEqual(12, allPsmsArray.Length);