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browser_tracks_hic.ini
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browser_tracks_hic.ini
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[hic matrix]
file = Li_et_al_2015.h5
title = depth = 200000; transform = log1p; min_value = 5
depth = 200000
min_value = 5
transform = log1p
file_type = hic_matrix
show_masked_bins = false
[hic matrix]
file = Li_et_al_2015.h5
title = depth = 250000; orientation = inverted; colormap = PuRd; min_value = 5;
max_value = 70
min_value = 5
max_value = 70
depth = 250000
colormap = PuRd
file_type = hic_matrix
show_masked_bins = false
orientation = inverted
[spacer]
height = 0.5
[hic matrix]
file = Li_et_al_2015.h5
title = depth = 300000; transform = log1p; colormap Blues (TADs:
overlay_previous = share-y; line_width = 1.5)
colormap = Blues
min_value = 10
max_value = 150
depth = 300000
transform = log1p
file_type = hic_matrix
[tads]
file = tad_classification.bed
#title = TADs color = none; border_color = black
file_type = domains
border_color = black
color = none
height = 5
line_width = 1.5
overlay_previous = share-y
show_data_range = false
[spacer]
height = 0.5
[hic matrix]
file = Li_et_al_2015.h5
title = depth = 250000; transform = log1p; colormap = bone_r (links: overlay_previous = share-y;
links_type = triangles; color = darkred; line_style = dashed, bigwig: color = red)
colormap = bone_r
min_value = 15
max_value = 200
depth = 250000
transform = log1p
file_type = hic_matrix
show_masked_bins = false
[test arcs]
file = links2.links
title =
links_type = triangles
line_style = dashed
overlay_previous = share-y
line_width = 0.8
color = darkred
show_data_range = false
[test bigwig]
file = bigwig2_X_2.5e6_3.5e6.bw
color = red
height = 4
title =
overlay_previous = yes
min_value = 0
max_value = 50
show_data_range = false
[spacer]
height = 0.5
[hic matrix]
file = Li_et_al_2015.h5
title = depth = 200000; show_masked_bins = true; colormap =
['blue', 'yellow', 'red']; max_value = 150
depth = 200000
colormap = ['blue', 'yellow', 'red']
max_value = 150
file_type = hic_matrix
show_masked_bins = true
[spacer]
height = 0.1
[x-axis]