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pharmrep.dtx
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pharmrep.dtx
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% \iffalse meta-comment
%<*internal>
\def\nameofplainTeX{plain}
\ifx\fmtname\nameofplainTeX\else
\expandafter\begingroup
\fi
%</internal>
%<*install>
\input docstrip.tex
\keepsilent
\askforoverwritefalse
\preamble
Copyright (C) 2015,2016 by Barbara Bredner <[email protected]>,
Barbara Jentges <[email protected]> and
Martin Sievers <[email protected]>
This work may be distributed and/or modified under the
conditions of the LaTeX Project Public License (LPPL), either
version 1.3c of this license or (at your option) any later
version. The latest version of this license is in the file:
http://www.latex-project.org/lppl.txt
This work is "maintained" (as per LPPL maintenance status) by
Barbara Bredner, Barbara Jentges and Martin Sievers.
This work consists of all files listed in manifest.txt.
\endpreamble
\postamble
\endpostamble
\usedir{tex/latex/pharmrep}
\nopostamble
\generate{
\file{\jobname.cls}{\from{\jobname.dtx}{class}}
}
\nopreamble\nopostamble
\Msg{*********************************************************}
\Msg{*}
\Msg{* To finish the installation you have to move the}
\Msg{* following file into a directory searched by TeX:}
\Msg{*}
\Msg{* \space\space pharmrep.cls}
\Msg{*}
\Msg{* To produce the documentation run the file pharmrep.dtx}
\Msg{* through LaTeX (twice).}
\Msg{*}
\Msg{* \space\space makeindex -s gglo.ist -o pharmrep.gls pharmrep.glo}
\Msg{* \space\space makeindex -s gind.ist pharmrep.idx}
\Msg{*}
\Msg{* through makeIndex to produce the glossary. Finally, run PdfLaTeX once again.}
\Msg{*}
\Msg{* Das ist schon alles!}
\Msg{*}
\Msg{* Happy TeXing!}
\Msg{*********************************************************}
%</install>
%<install>\endbatchfile
%<*internal>
\usedir{source/latex/pharmrep}
\generate{
\file{\jobname.ins}{\from{\jobname.dtx}{install}}
}
\nopreamble\nopostamble
\usedir{doc/latex/pharmrep}
\generate{
\file{pharmrep-manual.tex}{\from{\jobname.dtx}{manual}}
\file{pharmrep-manual.bib}{\from{\jobname.dtx}{manualbib}}
\file{\jobname-template.tex}{\from{\jobname.dtx}{template}}
%\file{\jobname-template.bib}{\from{\jobname.dtx}{templatebib}}
}
\ifx\fmtname\nameofplainTeX
\expandafter\endbatchfile
\else
\expandafter\endgroup
\fi
%</internal>
% \fi
%
% \iffalse
%<*driver>
\ProvidesFile{pharmrep.dtx}
%</driver>
%<class>\NeedsTeXFormat{LaTeX2e}[1999/12/01]
%<class>\ProvidesClass{pharmrep}
%<*class>
[2016/07/27 v2.0 PharmRep -- a LaTeX package for medical reports]
%</class>
%<*driver>
\documentclass{ltxdoc}
\usepackage{cmap}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage[english]{babel}
\usepackage{libertine}
\usepackage[scaled=0.83]{beramono}
\usepackage{textcomp}
\usepackage{microtype}
\usepackage[a4paper,margin=25mm,left=50mm,nohead]{geometry}
\usepackage[numbered]{hypdoc}
\usepackage[autostyle]{csquotes}
\usepackage{biblatex}
\addbibresource{\jobname-template.bib}
\usepackage{xspace}
\usepackage{siunitx}
\usepackage{booktabs}
\usepackage{ltablex}
\usepackage{graphicx}
\usepackage{tikz}
\usepackage{caption}
\usepackage{chemfig}
\usepackage{hyperref}
\hypersetup{%
colorlinks = true,%
allcolors = blue,%
breaklinks = true,%
linktoc = all,%
bookmarks = true,%
bookmarksopen = true,%
%bookmarkslevel = 2%
}
^^A\usepackage[nopostdot,nonumberlist,toc]{glossaries}
^^A\setlength{\glspagelistwidth}{\linewidth}
^^A\usepackage{glossary-list}
^^A\setglossarystyle{list}
^^A\makenoidxglossaries
^^A\newglossaryentry{abb:eCTD}{name={eCTD},description={electronic Common Technical Document}}
^^A\newglossaryentry{abb:CTD}{name={CTD},description={Common Technical Document}}
^^A\newglossaryentry{abb:ICH}{name={ICH},description={International Conference on Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use}}
^^A\newglossaryentry{abb:URL}{name={URL},description={Universal Resource Locator}}
%
\EnableCrossrefs
\CodelineIndex
\RecordChanges
\providecommand*{\env}[1]{\texttt{#1}}
\providecommand*{\pkg}[1]{\textsf{#1}}
\providecommand*{\PharmRep}{\textsf{PharmRep}\xspace}
\begin{document}
\DocInput{\jobname.dtx}
\end{document}
%</driver>
% \fi
%
% \CheckSum{0}
%
% \CharacterTable
% {Upper-case \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z
% Lower-case \a\b\c\d\e\f\g\h\i\j\k\l\m\n\o\p\q\r\s\t\u\v\w\x\y\z
% Digits \0\1\2\3\4\5\6\7\8\9
% Exclamation \! Double quote \" Hash (number) \#
% Dollar \$ Percent \% Ampersand \&
% Acute accent \' Left paren \( Right paren \)
% Asterisk \* Plus \+ Comma \,
% Minus \- Point \. Solidus \/
% Colon \: Semicolon \; Less than \<
% Equals \= Greater than \> Question mark \?
% Commercial at \@ Left bracket \[ Backslash \\
% Right bracket \] Circumflex \^ Underscore \_
% Grave accent \` Left brace \{ Vertical bar \|
% Right brace \} Tilde \~}
%
% \changes{v2.0}{2016/04/12}{First public release on Github}
%
% \GetFileInfo{\jobname.dtx}
% \DoNotIndex{\newcommand,\newenvironment}
%
% \title{\PharmRep -- A \LaTeX{} package for Medical Reports\thanks{This
% file describes version \fileversion, last revised \filedate.}}
% \author{Barbara Bredner\thanks{Email: [email protected]}
% \and Barbara Jentges\thanks{Email: [email protected]}
% \and Martin Sievers\thanks{Email: [email protected]}}
% \date{Released \filedate}
% \maketitle
%
% \begin{abstract}
% \noindent The class \PharmRep provides a set of tools for authors of submission-relevant
% documents in a consistent way. The package has an extended set of configuration options to make it
% possible to .....
%
% \PharmRep helps users to write standardised scientific pdf documents in professional layout that have to be
% sent (electronically) to authorities. The class setups a layout (page layout, fonts etc.) and different
% properties of the resulting output file (bookmarks, hyperlinks, tagging, fast web view etc.) to match given
% requirements. In addition a template can be used as a starting point for new documents.
% \end{abstract}
%
%
% \tableofcontents
%
% \section{Introduction}
% \subsection{Formal Requirements for Submission-relevant Documents}
% Minimum general requirements for layout and formatting of
% submission-relevant documents that form part of the Common Technical
% Document (CTD) are given in the internationally harmonized document
% ICH M4 (R3) <Referenz einfügen> and the Q-A document:
%
%
% \subsection{Basic Requirements for Layout and Format}
% \begin{itemize}
% \item Text and tables should be prepared using margins that allow
% the document to be printed on both A4 paper (E.U. and Japan) and 8.5 x 11”
% paper (U.S.)
% \item The left-hand margin should be sufficiently large that information is
% not obscured by the method of binding
% \item Font sizes for text and tables should be of a style and size that
% are large enough to be easily legible, even after photocopying.
% Times New Roman, 12-point font, is recommended for narrative text
% \item Every page should be numbered be starting at page one, except for
% individual literature references, where the existing journal page numbering
% is considered sufficient.
% \item Acronyms and abbreviations should be defined the first time they are
% used in each module.
% \item References should be cited in accordance with the current edition of
% the Uniform Requirements for Manuscripts Submitted to Biomedical Journals,
% International Committee of Medical Journal Editors (ICMJE)
% \item each page of a document should include a unique header or footer that
% briefly identifies its subject matter, an abbreviation of the full section
% number and title can be used. The applicant is free to put his logo on top
% of the CTD. However, logos are not acceptable in CTD sections' titles.
% \item In order to avoid 5th, 6th etc. level subheading numbering (e.g.
% 2.6.6.3.2.1) within a document, the applicant can use a shortened numbering
% string. In this case, the document number and the name (e.g.
% 2.6.6 Toxicology Written Summary) should appear in page headers or footers
% and then section numbering within the document can be used, for example,
% 1, 1.1, 2, 3, 3.1, 3.2 etc. Use of the full numbering string (e.g.
% 2.6.6.3.2.1) is also considered acceptable.
% \end{itemize}
%
%
% \subsection{Additional Settings that need to be considered for Portable
% Document Files}
% With the eCTD becoming the mandatory format of a dossier in the major
% industrial regions of the world, specific settings in the PDF documents as
% addressed in the ICH eCTD specification <include reference here>
% need to be considered in the submission-relevant documents. Additional
% regional settings may need to be considered as addressed in the
% region-specific Module 1 eCTD specifications.
%
%
% \section{Short Description about the Features of \PharmRep}
% \PharmRep is a \enquote{ready-to-use} class file for creating eCTD-compliant
% PDF documents with high-level layout that is harmonized all over the
% submission files created with \PharmRep. The class uses the format settings
% as required for submission relevant documents with view to becoming
% eCTD-PDFs. Once compiled, only minor PDF settings need to be completed in
% ADOBE (e.g. \enquote{initial view} etc as addressed in chapter xx of the
% present document).
%
% The \PharmRep class was especially developed for \LaTeX{} beginners. It has
% been developed with view to optimizing the creation of submission-relevant
% documents in a time-efficient way with focus on content without loosing time
%
% \section{Installation}
% TODO:text for installation needs to be included here
%
% <include general description about the package here>.
%
% \subsection{Specific Packages included into \PharmRep}
% The \PharmRep class includes a number of other packages that facilitate
% editing scientific texts and guarantee a level of harmonization throughout
% the complete submission-relevant documentation.
%
%
% \subsubsection{\pkg{siunitx} -- A Comprehensive (SI) Units Package}
% package \verb|siunitx|
%
% \enquote{Physical quantities have both numbers and units, and each physical
% quantity should be expressed as the product of a number and a unit.
% Typesetting physical quantities requires care to ensure that the combined
% mathematical meaning of the number-unit combination is clear. In particular,
% the SI units system (International System of Units) lays down a consistent
% set of units with rules on how these are to be used. However, different
% countries and publishers have differing conventions on the exact appearance
% of numbers (and units). The \pkg{siunitx} package provides a set of tools for
% authors to typeset quantities in a consistent way.The package has an extended
% set of configuration options which make it possible to follow varying
% typographic conventions with the same input syntax. The package includes
% automated processing of numbers and units, and the ability to control tabular
% alignment of numbers.}
%
% In addition, numbers are automatically formatted.
%
% Example:
%
% TODO: description of siunitx and examples
%
% \subsubsection{\pkg{hyperxmp} -- Creating PDF/A-1b Format}
% <Hier kurze Beschreibung zum Package einfügen>.
%
% \section{Instructions for the Users of \PharmRep Package}
% <hier kurze allgemeine Erläuterung einfügen; inbesondere der Hinweis, dass das Package für
% LaTex-Anfänger gedacht ist, die ohne erfahrene LaTex-User zu sein, mit Hilfe des Packages hochwertig
% formatierte Zulassungsdokumente erzeugen wollen. In diesem Sinne mögen Hinweise aus dem Kapitel
% Instructrions for the Users of PharmRep - insbesondere auch die im Anhang bereitgestellte short list of
% comman commands überflüssig erscheinen.
%
% \subsection{Section Levels and Section Numbering}
% Numbering of sections, subsections and subsubsections is added automatically during the compilation.
%
% The numbering is indicated by the command 'section' for title level 1, 'subsection' for level 2,
%'subsubsection' for level 3, and 'paragraph' for level 4.
% Please note: Only the 'section', 'subsection',... titles will be automatically converted to bookmarks during
% the PDF creation.
% For paragraphs, text is usually in the same layout as the title, but a paragraph is not numbered. The
% unnumbered 'paragraph' levels will not be converted to bookmarks during the PDF creation.
%
% \begin{itemize}
% \item Level 1 Title 1: sections: \verb|\section{Title}|
% \item Subtitle 1.1 level 2 - Sub-Title 1.1: subsections: \verb|\subsection{Title}|
% \item Section level 3 - Subsub-Title 1.1.1: subsubsections: \verb|\subsubsection{Title}|
% \item Section level 4 - ParagraphTitle : paragraph: \verb|\paragraph{Title}|
% \item Section level 5 - Sub-ParagraphTitle : subparagraph: \verb|\subparagraph{Title}|
% \end{itemize}
%
% \subsection{Page Orientation: Portrait and Landscape}
% TODO: Beschreibung
%
% \subsection{Common Formatting Functions}
% \subsubsection{Paragraphs and Line Breaks}
% \begin{itemize}
% \item new paragraph: insert 1 or more blank line(s) (more than 1 will be ignored during the
% compilation
% \item new line or linebreak: \verb|\newline|
% \end{itemize}
%
% \subsubsection{Hyphenation}
% \begin{itemize}
% \item separate words: \verb| | 1 or more blanks (more than 1 will be ignored during the compilation)
% \item no break between two words: \verb|~|
% \item enable hyphenation at specific locations of a word: \verb|\-| (e.g. \verb|reac\-tion|) Usually not necessary since hyphenation is already enabled by the loaded packages
% \end{itemize}
%
% \subsubsection{Quotation Marks}
% \begin{itemize}
% \item quotation mark (``double'') \verb|``double''|
% \item quotation mark (`single')Fett un \verb|`single'|
% \item csquotes
% \end{itemize}
%
% \subsubsection{Font Style}
% \begin{itemize}
% \item \textbf{bold} text: \verb|\textbf{text}|
% \item \textit{italic} text: \verb|\textit{text}|
% \item {\small small text}: \verb|{\small small text}|
% \item {\footnotesize footnotesize text}: \verb|{\footnotesize footnotesize text}|
% \item {\tiny tiny text}: \verb|{\tiny tiny text}| (usually too small)Inhalt...
% \end{itemize}
%
% \subsubsection{Special Characters}
% \LaTeX{} is a macro language. As such it uses some characters for special purposes. Therefore you can not use e.g. \%, \$ or \& directly, but you have to \enquote{mask} them.
%
% In most cases a backslash (\textbackslash) directly in front of a special character will work, e.g.
% \begin{itemize}
% \item \% (percent): \verb|\%|
% \item \& (ampersand): \verb|\&|
% \item \$ (dollar sign): \verb|\$|
% \end{itemize}
%
% \subsection{Annotations in a \TeX{} file}
% Annotations in the \TeX{} file may be used for explanatory purposes -- or as
% a reminder that specific information is still missing and needs to be
% included into the document.
%
% Please note: annotations will only appear in the \TeX{} file, they are not
% converted into the PDF file.
%
% The Symbol for annotations in the tex-file is \verb| %| (everything in a line
% after a \% is ignored)
%
% \subsection{Tables}
% In \LaTeX{}, 'table' is the name for a floating object (see
% p.~\pageref{subsubsec:TableFloating}), whereas \env{tabular} provides the
% environment for tables. In a \env{tabularx} environment, the table width can
% be set (e.g. to \cs{textwidth}) and page breaks are enabled\footnote{for
% \PharmRep the package \pkg{ltablex}~\cite{pkg:ltablex} is automatically
% loaded}.
%
% Creating tables with \LaTeX requires some experience. In the following, basic
% instructions on how to create tables are described. Alternatively, tables can
% be created in MS~Excel and converted into LaTex-tables by installing the
% Excel-add-in \pkg{Excel2LaTeX}~\cite{pkg:Excel2LaTeX}. Tables can also be
% included as objects.
%
% \subsubsection{Caption of Tables}
% Every table included into a document requires a brief, informative title
% (\emph{caption}) that describes its contents in nonsentence format
% <Let.Ref. ACS Style Guide>. Tables are numbered sequentially with arabic
% numerals.
%
% Please make sure that every table needs to be discussed within the text,
% whereas the tables should be discussed sequentially, so that Table~1 is
% discussed before Table~2, Table~2 before Table~3, and so on <ACS
% Style Guide>.
%
% The \PharmRep class automatically places the caption above the table
% (regardless of the position in the \TeX{} file. This is achieved with
% \pkg{floatrow}~\cite{pkg:floatrow}.
%
% Please note that the word \emph{Table} is only capitalized when it is
% followed by the table number -- and in the beginning of the table caption
% that starts with Table, followed by its numeral.
%
% Each table with a caption is automatically listed in the list of tables.
%
%
% \subsubsection{General layout options for tables}
% \begin{verbatim}
% The instructions as given below create a basic table with two columns and
% three row. In general, columns are separated by the symbol \& (ampersand)
% and rows are ended by using the command \textbackslash\textbackslash
% (double backslash). The column format is defined at the beginning of the
% table, e.g. \verb|{rr}| for two right-aligned columns (more options see
% \autopageref{tab:TabGenLayout}).
%
% \captionof{table}{first tabular}\label{tab:FirstTab}
% \begin{tabular}{rr}
% a & 1 \\
% b & 2 \\
% c & 3 \\
% \end{tabular}
% \end{verbatim}
%
% As an example, the instructions as given above create \autoref{tab:FirstTab}
% with two columns and three rows.
% \begin{minipage}{\linewidth}
% \captionof{table}{first tabular}\label{tab:FirstTab}
% \begin{tabular}{rr}
% a & 1 \\
% b & 2 \\
% c & 3 \\
% \end{tabular}
% \end{minipage}
%
% The layout of a table can be modified with a huge number of commands and
% tools. The major characteristics of a table are the number and type of
% columns and lines. \autoref{tab:TabGenLayout} shows some of the options
% using the following code:
% \begin{verbatim}
% \begin{minipage}{\linewidth}%
% \captionof{table}[xyz]{Some Options for tables}\label{tab:TabGenLayout}
% \begin{tabularx}{\linewidth}{rlcp{10mm}S}\toprule
% \textbf{Col 1} & \textbf{ Col 2} & \textbf{Col 3} &
% \textbf{Col 4} & \textbf{ Col 5} \\ \cmidrule{1-4}
% right & left & centered & fixed width &
% \text{justified at decimal separator} \\ \midrule
% & & & & 12.97 \\
% & & & & 0.4 \\
% & & & & 10000.3 \\ \bottomrule
% \end{tabularx}
% \end{minipage}%
% \end{verbatim}
%
% that results in the following PDF output:
% \begin{minipage}{\linewidth}
% \captionof{table}[xyz]{Some Options for tables}\label{tab:TabGenLayout}
% \begin{tabular}{rlcp{10mm}S}\toprule
% \textbf{Col 1} \texttt{r} & \textbf{ Col 2} \texttt{l} & \textbf{Col 3}
% \texttt{c} & \textbf{Col 4} \texttt{p} & \textbf{ Col 5} \texttt{S} \\
% \cmidrule(lr){1-4}
% right & left & centered & fixed width & \text{justified at decimal separator} \\
% \midrule
% & & & & 12.97 \\
% & & & & 0.4 \\
% & & & & 10000.3 \\ \bottomrule
% \end{tabular}%
% \end{minipage}
%
%
% \subsubsection{General Commands for Table Layout}
% In the follwing, general commands for typical table layout is given.
% \paragraph{Column without and with Linebreak}
% \begin{description}
% \item[Column] \textbf{formats}
% \begin{description}
% \item[without] \textbf{linebreak}
% \begin{description}
% \item[\texttt{r}] aligned right
% \item[\texttt{l}] aligned left
% \item[\texttt{c}] centered
% \item[\texttt{S}] aligned at decimal separator
% \end{description}
% \item[with] \textbf{linebreak}
% \begin{description}
% \item[\texttt{p{<width>}}] parbox (\enquote{paragraph box}) with predefined
% width
% \item[\texttt{X}] only in \texttt{tabularx} environment: parbox with flexible
% width to meet the predefined tablewidth (e.g. \verb|{\linewidth}|)
% \end{description}
% \end{description}
%
% \paragraph{Long Table: Same Header and Footer on every Page}
% \item[Header] \textbf{and footer} (example see p.\pageref{subsubsec:longtables}\,ff.)
% \begin{description}
% \item[\cs{endhead}] [optional argument] table content
% before this command will be used for the header on every page of a table
% \item[\cs{endfoot}] [optional argument] table content between
% \cs{endhead} and \cs{endfoot} will be used for the footer on every page of
% a table. The footer is defined at the beginning of a table!
% \end{description}
%
% \paragraph{Table Lines - Horizontal and Vertical}
% \item[Lines] Use horizontal lines rarely and avoid vertical lines always.
% Reasons and examples see e.g.~\cite{pkg:booktabs}
% \begin{description}
% \item[horizontal] \textbf{lines} (avoid whenever possible)
% \begin{description}
% \item[\texttt{\textbackslash toprule}] first horizontal line at the top of
% the table
% \item[\cs{midrule}] horizontal line within the table
% \item[\cs{cmidrule\marg{a-b}}] horizontal line starting at
% column \texttt{a} and ending at column \texttt{b}
% \item[\cs{cmidrule\parg{lr}\marg{a-b}}] horizontal line starting at column
% \texttt{a} and ending at column \texttt{b} trimmed on the left (\texttt{l})
% and right (\texttt{r}) side
% \item[\texttt{\textbackslash bottomrule}] last horizontal line at the end of
% the table
% \end{description}
% \item[vertical] \textbf{lines} Vertical lines in tables should be avoided in
% general. (They are easy to use in \LaTeX, but a huge challenge regarding the
% readability and usability of any document.)
% \end{description}%
% \end{description}%
%
%
% \subsubsection{Table Footnotes}
% <include instructions here>
%
% \subsubsection{Positioning of Tables -- Floating Objects versus Manually
% Positioned Objects}\label{subsubsec:TableFloating}
% In \LaTeX{}, tables and figures can basically be positioned in two different
% ways: They are included manually and appear exactly at this place (like in
% word processing software, e.g. Microsoft Word) or they can be included as a
% \emph{floating object}.
%
%
% \paragraph{Floating Table}
% Floating objects are included where they are in the code if there is enough
% space for a eye-friendly layout. In case the place is too small floating
% objects are positioned automatically near the original insertion. `Near' can
% be on the same page, the next page or farer away depending on the amount of
% text and/or other floating objects. Floating provides a more professional
% layout and should be used if possible to increase the readability.
% \begin{table}[hbpt]
% \begin{tabular}{ccc}\toprule
% A & B & C \\\midrule
% 1 & has & 6 \\
% 2 & a yellow & 4 \\
% 3 & car & 2 \\\bottomrule
% \end{tabular}
% \caption[short caption table]{Table as a floating object}
% \label{tab:tableFloatingObject}
% \end{table}
%
% Code for table~\ref{tab:tableFloatingObject} (p.~\pageref{tab:tableFloatingObject})
% \begin{verbatim}
% \begin{table}[hbpt]
% \begin{tabular}{ccc}\toprule
% A & B & C \\\midrule
% 1 & has & 6 \\
% 2 & a yellow & 4 \\
% 3 & car & 2 \\\bottomrule
% \end{tabular}
% \caption[short caption table]{Table as a floating object}%
% \label{tab:tableFloatingObject}
% \end{table}
% \end{verbatim}
%
% printed in list of tables as \enquote{\ref{tab:tableFloatingObject}
% {\color{blue}short caption table}}. The optional short title
% \verb|[short caption table]| in square brackets is used for LOT.
% If no short title is given the long caption is printed in the list of tables.
%
% referred to by using:\newline
% \verb|table \ref{tab:tableFloatingObject}| (result:
% table~\ref{tab:tableFloatingObject}) or \newline
% \verb|\autoref{tab:tableFloatingObject}| (result:
% \autoref{tab:tableFloatingObject})
%
% page number:\newline
% \verb|page \pageref{tab:tableFloatingObject}| (result:
% page~\pageref{tab:tableFloatingObject}) or
% \newline
% \verb|\autopageref{tab:tableFloatingObject}| (result:
% \autopageref{tab:tableFloatingObject})
%
%
% \subsubsection{In-Text References to Tables}
% In general, the instruction \verb|\label{key}| is used mark all kinds of numbered objects (tables, figures, but also sections, paragraphs and footnotes).
%
% If a table or figure is included directly at a specific place a caption is
% included by
% \verb|\captionof{figure}[short]{title}\label{fig:figurelabel}| or \newline
% \verb|\captionof{figure}[short]{title}\label{tab:tablabel}|
%
% For floating tables or figures in a floating environment
% \verb|\begin{table}...\end{table}| (see
% \ref{subsubsec:TableFloating}) or \verb|\begin{figure}...\end{figure}| (see
% \ref{subsubsec:FigureFloating}):
% \verb|\caption[short]{title}\label{fig:figurelabel}| or \newline
% \verb|\caption[short]{title}\label{tab:tablabel}|
%
% \verb|[short]|: optional \enquote{shortcaption} being printed in the list of
% figures or list of tables, respectively, and `title' used for the figure or
% table itself. The label is used for reference purposes, e.g.
% \verb|\ref{fig:figurelabel}| or \verb|\ref{tab:tablabel}|
%
% Label names do not work with special characters (except `:') or blanks.
%
% \subsubsection{MS Excel Add-in 'Excel2LaTeX'}
% Excel spreadsheets can be converted into a \LaTeX{} tabular structure manually or using third party
% software, e.g. Excel2Latex (available on \url{http://www.ctan.org/pkg/excel2latex}).
%
% Excel2Latex works for Windows, Mac OS X and Excel~2000 up to Excel~2010. For Excel~2007 and
% Excel~2010 the add-in has to be activated within the options menu in Excel. After a restart of Excel and
% the
% activation of `Excel2Latex' as a secure macro the add-in excel2latex is available in the ribbon `Add-In'.
% <diese Angaben müssen noch auf Korrektheit geprüft werden; ggfs. hier keine weiteren Angaben,
% sondern nur Referenz auf das package, wo in der readme alle weiteren Details beschrieben sind>.
%
% Instead of converting Excel or Word tables (and other parts) into \LaTeX the part could be included using
% \verb|\includegraphics| (see p.\pageref{sec:includepdfs}). <hier: Hinweis auf Vorgehensweise, wenn
% PDF/A-1b gefordert ist>.
%
%
% \subsection{Figures}
% Figures are not directly inserted into the tex file, but are created as separate files which are included
% during the compilation. For PDF generation, file formats png, jpg or pdf are allowed, all others will
% produce
% an error.The figure-files need to be stored in the same folder as the tex file (alternatively, the complete
% file-path has to be provided).
%
% \subsubsection{Caption of Figures}
% Every figure included into a document requires a brief, informative title ('caption') that describes its
% contents in nonsentence format <Let.Ref. ACS Style Guide>. Figures are numbered sequentially with
% arabic
% numerals.
% Please make sure that every figure needs to be discussed within the text, whereas the figures should be
% discussed sequentially, so that Figure 1 is discussed before Figure 2, Figure 2 before Figure 3, and so on
% <ACS Style Guide>.
%
% A fiugre caption should be placed below the figure.
%
% Please note that the word "Figure" is only capitalized when it is followed by the figure number - and in
% the beginning of the figure caption that starts with Figure, followed by its numeral.
%
% Each figure with a caption is automatically listed in the list of figures.
%
% \subsubsection{Positioning of Figures -- Floating versus Manual}\label{subsubsec:FigureFloating}
% \paragraph{Automatic Insertion of Figures ('Floating Figures')}
%
% \begin{figure}[hbpt]
% \includegraphics[width=0.2\linewidth]{ctanlion}
% \caption[short caption figure]{Figure as a floating object. CTAN lion drawing by Duane Bibby; thanks to \url{www.ctan.org}}
% \label{fig:figureFloatingObject}
% \end{figure}
%
% Code for figure \ref{fig:figureFloatingObject} (page~\pageref{fig:figureFloatingObject})
% \begin{verbatim}
% \begin{figure}[hbpt]
% \includegraphics[width=0.2\linewidth]{ctanlion}
% \caption[short caption figure]{Figure as a floating object. CTAN lion drawing by Duane Bibby; thanks to \url{www.ctan.org}}
% \label{fig:figureFloatingObject}
% \end{figure}
% \end{verbatim}
%
%
% printed in list of tables as ``\ref{fig:figureFloatingObject} {\color{blue}short caption figure}'' . The
% optional short title in squared brackets \verb|[short caption figure]| is used for LOF. If no short title is
% given the complete caption is printed in the list of figures.
%
% referred to by using:\newline
% \verb|figure \ref{fig:figureFloatingObject}| (result: figure \ref{fig:figureFloatingObject}) or \newline
% \verb|\autoref{fig:figureFloatingObject}| (result: \autoref{fig:figureFloatingObject})
%
% page number:\newline
% \verb|page \pageref{fig:figureFloatingObject}| (result: page \pageref{fig:figureFloatingObject}) or
%\newline
% \verb|\autopageref{fig:figureFloatingObject}| (result: \autopageref{fig:figureFloatingObject})
%
%
% \paragraph{Manual Insertion of Figures}\label{subsubsec:FigureManualInserted}
%
% \begin{minipage}[t]{\linewidth}%
% \includegraphics[width=0.2\linewidth]{ctanlion}
% \captionof{figure}{example of a manually inserted figure}%
% \label{fig:figureManuallyInserted}
% \end{minipage}%
%
% Code for figure \ref{fig:figureManuallyInserted} (page \pageref{fig:figureManuallyInserted})
% \begin{verbatim}
% \begin{minipage}[t]{\linewidth}%
% \includegraphics[width=0.2\linewidth]{ctanlion}
% \captionof{figure}{example of a manually inserted figure}%
% {\label{fig:figureManuallyInserted}}
% \end{minipage}%
% \end{verbatim}
%
% Note: It is recommended to end the \verb|\begin{minipage}| and \verb|\end{minipage}| line with a
% percent sign (\%) to avoid spurious blanks.
%
% \subsubsection{In-Text References to Figures}
% \verb|\label{key}| is used for names and references of tables, figures and everything else (e.g. sections,
% paragraphs).
%
% If a table or figure is included directly at a specific place a caption is included by
%
% \verb|\captionof{figure}[short]{title}\label{fig:figurelabel}| or \newline
% \verb|\captionof{figure}[short]{title}\label{tab:tablabel}|
%
% A table caption should be placed at the beginning of the table whereas a figure caption is usually
% beneath the figure.
%
% For floating tables or figures in a floating environment \verb|\begin{table}...\end{table}| (see
%\ref{subsubsec:TableFloating}) or \verb|\begin{figure}...\end{figure}| (see \ref{subsubsec:FigureFloating}):
%
% \verb|\caption[short]{title}\label{fig:figurelabel}| or \newline
% \verb|\caption[short]{title}\label{tab:tablabel}|
%
% \verb|[short]|: optional `shortcaption' being printed in the list of figures or list of tables, respectively,
% and `title' used for the figure or table itself. The label is used for reference purposes, e.g.
%
% \verb|\ref{fig:figurelabel}| or \verb|\ref{tab:tablabel}|
%
% Label names do not work with special characters (except `:') or blanks.
%
% \subsection{Footnotes in Text}
% Footnotes are set by including \verb|\footnote{text}| directly behind the word, where the footnote
% should be added. No space should be placed between word and instruction. THe footnote will be
% automatically numbered and placed at the end of the page.
%
% \subsection{Lists and Enumeration Items}
% Lists can be described with different enumeration items. Generally, bullet points, numbered and
% description are used.
%
% Reference of lists (only useful for pagenumber reference since lists do not have a number/internal
% counter):
% Define unique label using\newline
% \verb|\label{list:listdescription}| \newline
% Label names do not work with special characters (except `:') or blanks.
%
% \subsubsection{Bullet Point Lists}
% \begin{itemize}
% \item item 1
% \item item 2
% \end{itemize}
%
% Code for bullet point list:
% \begin{verbatim}
% \begin{itemize}
% \item item 1
% \item item 2
% \end{itemize}
% \end{verbatim}
%
% \subsubsection{Numbered List}
% \begin{enumerate}
% \item item 1
% \item item 2
% \end{enumerate}
%
% Code for numbered list:
% \begin{verbatim}
% \begin{enumerate}
% \item item 1
% \item item 2
% \end{enumerate}
% \end{verbatim}
%
% \subsubsection{Description List}
% \begin{description}
% \item[description label 1] item 1
% \item[description label 2] item 2
% \end{description}
%
% Code for description list:
% \begin{verbatim}
% \begin{description}
% \item[description label 1] item 1
% \item[description label 2] item 2
% \end{description}
% \end{verbatim}
%
% \subsubsection{List in a List}
% Lists can be combined arbitrarily and levels are automatically formatted, e.g. bullet point and numbered
% list:
% \begin{itemize}
% \item item 1
% \begin{enumerate}
% \item subitem 1
% \item subitem 2
% \begin{itemize}
% \item subsubitem 1
% \item subsubitem 2
% \end{itemize}
% \item subitem 3
% \end{enumerate}
% \item item 2
% \end{itemize}
%
% Code for the combined list:
% \begin{verbatim}
% \begin{itemize}
% \item item 1
% \begin{enumerate}
% \item subitem 1
% \item subitem 2
% \begin{itemize}
% \item subsubitem 1
% \item subsubitem 2
% \end{itemize}
% \item subitem 3
% \end{enumerate}
% \item item 2
% \end{itemize}
% \end{verbatim}
%
% \subsection{Splitting Large Documents}
% Large documents can be split into several \verb|*.tex| files. Special characters should be avoided in the
% PDF file name!. For an example see below:
%
% \begin{itemize}
% \item three files: \verb|master.tex|, \verb|part1.tex| and \verb|part2.tex|
% \item \verb|master.tex|: usual \LaTeX file with definition of styles, commands, etc.
% \item \verb|part1.tex|, \verb|part2.tex|: two files with content which is copy-pasted into
% \verb|master.tex| using \verb|\input|
% \end{itemize}
%
% Typical commands for splitting documents are the following: <Kommandozeilen sind nicht klar, sollten
% besser erläutert werden>.
%
% \begin{minipage}{\linewidth}
% \begin{verbatim}
% %%% master.tex file:
%
% % preamble, styles, etc.
% [...]
%
% \begin{document}
% some text
% \input{part1.tex}
% more text
% \input{part2.tex}
% some more text
% \end{document}
% \end{verbatim}
% \end{minipage}
%
%
% \subsection{Including Figures from external PDFs into the \LaTeX{} File}\label{sec:includepdfs}
% Pictures, figures, tables and any other objects that are provided in PDF-files can be included into \LaTeX{}
% by using the command \cs{includegraphics\oarg{options}\marg{filename}}. Special characters and spaces should be avoided
% in the PDF file name!
% \par\bigskip
%
% Example
% \begin{itemize}
% \item The figure of the PDF-file \verb|pdfexample.pdf| is planned to be included into the file
%\verb|master.tex|
% \item \verb|master.tex|: usual \LaTeX file with definition of styles, commands, etc.
% \item \verb|pdfexample.pdf|: pdf file
% \end{itemize}
%
% \begin{minipage}{\linewidth}%
% {\small
% \begin{verbatim}
%%% master.tex file:
%
% preamble, styles, etc.
% [...]
%
% \begin{document}
% some text
% \begin{minipage}{\linewidth}%
% \captionof{figure}{example including pdf}
% \includegraphics[page=1, trim=60mm 170mm 90mm 40mm, clip]{pdfexample.pdf}
% \end{minipage}%
% more text
% \end{document}
% \end{verbatim}%
% }
% \end{minipage}%
%
%
% \subsubsection{Clipping of PDF Page}
% Clipping of PDF pages is done via \verb|trim=<left> <top> <right> <bottom>| (with arbitrary units, e.g.
% mm, pt) and (mandatory!) \verb|clip|.
%
% <nicht klar, was hier passiert>.
%
% <NOTE: if a PDF/A-1b document is required, the external PDF needs to be PDF/A-1b compliant itself. This
% can be created from other files (e.g. MS WORD, MS VISIO,etc) by using the 'print as' function and
% choosing
% in the PDF-properties the setting to create a PDF/A-1b-compatible PDF>.
%
% \begin{figure}[htb]
% \centering
% \fcolorbox{blue}{white}{\includegraphics[page=1,trim = 60mm 170mm 90mm 40mm,clip]{pdfexample.pdf}}
% \caption[example including pdf]{example including pdf (colored box for demonstration purposes)}
% \end{figure}%
%
% \subsection{Commenting in \TeX{} files}
% A practical tool during the creation of a document is the inclusion of comments into the tex-files. This
% may serve as reminders, remaining action items or comments required during document review.
%
%%% TODO: %%%todo{a comment in the margin}Comments can be included with \verb|\todo{text}| for comments in the %margin and \verb|[inline]{text}| for comments in the text. Do % TODO: % not use \verb|\todo|-comments within other %environments (e.g. figures, tables, etc.)
%%% TODO: %%%%todo[inline, color=green]{a green inline comment}
% \begin{verbatim}
% \todo{a comment in the margin}
% \todo[inline, color=green]{a green inline comment}
% \end{verbatim}
% If at least one \verb|\todo|-command is present in the text the list of todonotes will be printed using
% \verb|\listoftodos|.
%
% \subsection{Bibliography with JabRef and Citations}
% \subsubsection{Extenal Bibliography with JabRef}
% External sources (books, papers, websites, etc.) are stored in a separate file \verb|literatur.bib|. bib-files
% can be created using JabRef (\href{http://jabref.sourceforge.net/}{jabref.sourceforge.net/}), online and
% versions for local installation available).
% Example \verb|literatur.bib|:{\footnotesize
% \begin{verbatim}
% ...
% @ELECTRONIC{Q1E,%
% author = {{International Conference on Harmonization}},%
% shorthand = {{International Conference on Harmonization (2004)}},%
% month = {6},%
% year = {2004},%
% title = {Guidance for Industry: Q1E Evaluation of Stability Data.},%
% url = {http://www.fda.gov/RegulatoryInformation/Guidances/ucm128092.htm},%
% urldate = {2014-06-28},%
% owner = {Jane Doe},%
% }%
% @BOOK{Krishnamoorthy,%
% title = {Statistical Tolerance Regions},%
% shorthand = {Statistical Tolerance Regions (2009)}%
% publisher = {Wiley},%
% year = {2009},%
% author = {Kalimuthu Krishnamoorthy and Thomas Mathew},%
% isbn = {9780470380260},%
% owner = {Jane Doe},%
% timestamp = {2014-05-13},%
% totalpages = {461}%
% }
% ...
% \end{verbatim}}
%
% The bibliography entries are sorted during the compilation of the bibliography. This has to be done
% separately and in addition to the text compilation (e.g. in TeXstudio key \verb|F11| for bibliography and
% key~\verb|F6| for text compilation). Tool for generating BibTeX-entries, e.g.
% \href{http://lead.to/amazon/en/}{http://lead.to/amazon/en/} (uses Amazon data base) and
% \href{http://literatur-generator.de/}{http://literatur-generator.de/} (uses google). It doesn't matter if the
% bib-file contains more bibliography entries than the tex-file; only cited sources are listed in the
% bibliography.
%
% Test: \href{http://amazon.com}{Amazon.com}
% %
% Note: The configuration for TeXstudio has to be changed that biber is used for the bibliography (see figure~\ref{fig:TeXStudioBiber}).%
% \begin{figure}[htb]
% \centering
% \includegraphics[width=\linewidth]{TeXStudioBiber}%
% \caption{Configuration for biber in TeXstudio}
% \label{fig:TeXStudioBiber}
% \end{figure}
%
% \subsubsection{Citations}
% All citations use the unique key for a bibliographical entry, e.g. \verb|Q1E| or \verb|Krishnamoorthy|.%
% using \verb|\cite{Q1E}|: \cite{Q1E}\\%
% using \verb|\cite[123]{Q1E}|: \cite[123]{Q1E}\\%
% using \verb|\cite[123--125]{Q1E}|: \cite[123--125]{Q1E}\\%
% using \verb|\autocite{Q1E}|: \autocite{Q1E}\\%
% using \verb|text\footcite{Q1E}|: text\footcite{Q1E}\\%
% using \verb|\fullcite{Q1E}|: \fullcite{Q1E}\\%
% Print all bibliographic entries used in the text (indepedent of the entries in the bibliography file) with a numbered section:%
% \verb|\printbibliography]|%
% \printbibliography%
%
% \subsubsection{In-text Use of Universal Resource Locators (URLs)}
% A Universal Resource Locator \gls{abb:URL} (which is the path to a certain file on the World Wide Web)
% can be included directly into the text
% on two different ways:
% \begin{itemize}
% \item by including the instruction \verb|\url{URL}| Inhalt...
% \item with differnt descriptive text or url: \verb|\href{URL}{text}|
% \end{itemize}
%
% Examples:%
% \verb|\url{http://ctan.org}| \url{http://ctan.org}
%
% \verb|\href{http://ctan.org}{ctan.org}| \href{http://ctan.org}{ctan.org}
%
% \subsection{Creating a `List Abbreviations, Acronmys and Symbols'}\label{sec:glossary}
% Abbreviations, acronyms and symbols that are used within the text need to be pre-defined in the
% preamble <where exactly?>, e.g.\\
% \verb|\newglossaryentry{abb:eCTD}|\newline
% \hspace*{2em}\verb|{name={eCTD},|\newline
% \hspace*{2em}\verb|description={electronic Common Technical Document}}|
%
% After an abbreviation has been defined in the preamble, it can be used in the following text, e.g.
% using \verb|\gls{abb:eCTD}|: \gls{abb:eCTD}
%
% using \verb|\gls{abb:CTD}|: \gls{abb:CTD}