From 23684cd7208d9b568517bada765103e68094987e Mon Sep 17 00:00:00 2001
From: geertvangeest <geert.vangeest@bioinformatics.unibe.ch>
Date: Mon, 29 Apr 2024 15:18:33 +0200
Subject: [PATCH] adds bioc to renv

---
 renv.lock          | 61 ++++++++++++++++++++++++++++++++++++++++++++++
 renv/settings.json |  2 +-
 2 files changed, 62 insertions(+), 1 deletion(-)

diff --git a/renv.lock b/renv.lock
index e34b2e4..579b72e 100644
--- a/renv.lock
+++ b/renv.lock
@@ -2,12 +2,35 @@
   "R": {
     "Version": "4.3.1",
     "Repositories": [
+      {
+        "Name": "BioCsoft",
+        "URL": "https://bioconductor.org/packages/3.18/bioc"
+      },
+      {
+        "Name": "BioCann",
+        "URL": "https://bioconductor.org/packages/3.18/data/annotation"
+      },
+      {
+        "Name": "BioCexp",
+        "URL": "https://bioconductor.org/packages/3.18/data/experiment"
+      },
+      {
+        "Name": "BioCworkflows",
+        "URL": "https://bioconductor.org/packages/3.18/workflows"
+      },
+      {
+        "Name": "BioCbooks",
+        "URL": "https://bioconductor.org/packages/3.18/books"
+      },
       {
         "Name": "CRAN",
         "URL": "https://p3m.dev/cran/2023-10-30"
       }
     ]
   },
+  "Bioconductor": {
+    "Version": "3.18"
+  },
   "Packages": {
     "BH": {
       "Package": "BH",
@@ -377,6 +400,30 @@
       ],
       "Hash": "543776ae6848fde2f48ff3816d0628bc"
     },
+    "bit": {
+      "Package": "bit",
+      "Version": "4.0.5",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "d242abec29412ce988848d0294b208fd"
+    },
+    "bit64": {
+      "Package": "bit64",
+      "Version": "4.0.5",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "bit",
+        "methods",
+        "stats",
+        "utils"
+      ],
+      "Hash": "9fe98599ca456d6552421db0d6772d8f"
+    },
     "bitops": {
       "Package": "bitops",
       "Version": "1.0-7",
@@ -1086,6 +1133,20 @@
       ],
       "Hash": "588d091c35389f1f4a9d533c8d709b35"
     },
+    "hdf5r": {
+      "Package": "hdf5r",
+      "Version": "1.3.8",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "R6",
+        "bit64",
+        "methods",
+        "utils"
+      ],
+      "Hash": "cb0f2296c8ce6508c5bcfbdae359b6ea"
+    },
     "here": {
       "Package": "here",
       "Version": "1.0.1",
diff --git a/renv/settings.json b/renv/settings.json
index ffdbb32..45ee56f 100644
--- a/renv/settings.json
+++ b/renv/settings.json
@@ -1,5 +1,5 @@
 {
-  "bioconductor.version": null,
+  "bioconductor.version": "3.18",
   "external.libraries": [],
   "ignored.packages": [],
   "package.dependency.fields": [