diff --git a/examples/neXtProt/NXQ_00253.ttl b/examples/neXtProt/NXQ_00253.ttl index d29621bfe..2ab816cb2 100644 --- a/examples/neXtProt/NXQ_00253.ttl +++ b/examples/neXtProt/NXQ_00253.ttl @@ -8,7 +8,6 @@ ex:NXQ_00253 a sh:SPARQLExecutable, rdfs:comment "Human pathways in which at least one protein is mitochondrial GOLD"@en ; sh:prefixes _:sparql_examples_prefixes ; sh:select """PREFIX : -PREFIX dc: PREFIX dcterms: PREFIX nextprot_cv: PREFIX rdfs: @@ -29,7 +28,7 @@ select ?pathwayname (group_concat(distinct ?gen ; SEPARATOR = ',') as ?gene) WHE ?pathway a wp:Pathway . ?pathway wp:organism ?organism . filter(contains(str(?organism),"9606")) - ?pathway dc:title ?pathwayname . + ?pathway dcterms:title ?pathwayname . } ?entry a :Entry . diff --git a/examples/neXtProt/NXQ_00254.ttl b/examples/neXtProt/NXQ_00254.ttl index 3545664a8..4d96796b9 100644 --- a/examples/neXtProt/NXQ_00254.ttl +++ b/examples/neXtProt/NXQ_00254.ttl @@ -8,7 +8,6 @@ ex:NXQ_00254 a sh:SPARQLExecutable, rdfs:comment "Proteins with associated pathways in WikiPathways"@en ; sh:prefixes _:sparql_examples_prefixes ; sh:select """PREFIX : -PREFIX dc: PREFIX dcterms: PREFIX rdfs: PREFIX wp: @@ -29,7 +28,7 @@ SELECT DISTINCT ?entry ?gen ?pathwayname WHERE { ?pathway a wp:Pathway . ?pathway wp:organism ?organism . filter(contains(str(?organism),"9606")) # Human proteins - ?pathway dc:title ?pathwayname . + ?pathway dcterms:title ?pathwayname . } ?entry a :Entry . ?entry :gene / :recommendedName / rdfs:label ?gen . diff --git a/examples/neXtProt/NXQ_00269.ttl b/examples/neXtProt/NXQ_00269.ttl index b67ee8f5a..f4c2f95c8 100644 --- a/examples/neXtProt/NXQ_00269.ttl +++ b/examples/neXtProt/NXQ_00269.ttl @@ -8,7 +8,6 @@ ex:NXQ_00269 a sh:SPARQLExecutable, rdfs:comment "Proteins with associated cancer pathways in WikiPathways (via Disease Ontology classification)"@en ; sh:prefixes _:sparql_examples_prefixes ; sh:select """PREFIX : -PREFIX dc: PREFIX dcterms: PREFIX rdfs: PREFIX wp: @@ -26,7 +25,7 @@ SELECT DISTINCT ?entry (str(?gen) as ?gene) ?pathwayname WHERE { ?pathway a wp:Pathway . ?pathway wp:organism ?organism . filter(contains(str(?organism),"9606")) # Human proteins - ?pathway dc:title ?pathwayname . + ?pathway dcterms:title ?pathwayname . ?pathway wp:ontologyTag . # Parent id for all cancers } ?entry a :Entry . diff --git a/examples/neXtProt/NXQ_00270.ttl b/examples/neXtProt/NXQ_00270.ttl index 1150f775b..0e8264198 100644 --- a/examples/neXtProt/NXQ_00270.ttl +++ b/examples/neXtProt/NXQ_00270.ttl @@ -8,7 +8,6 @@ ex:NXQ_00270 a sh:SPARQLExecutable, rdfs:comment "Proteins belonging to Rett syndrome pathways, and their subcellular locations (GOLD)"@en ; sh:prefixes _:sparql_examples_prefixes ; sh:select """PREFIX : -PREFIX dc: PREFIX dcterms: PREFIX rdfs: PREFIX wp: @@ -29,7 +28,7 @@ select ?entry (str(?gen) AS ?gene) ?pathwayname (group_concat(distinct str(?locl ?pathway a wp:Pathway . ?pathway wp:organism ?organism . filter(contains(str(?organism),"9606")) - ?pathway dc:title ?pathwayname . + ?pathway dcterms:title ?pathwayname . filter(regex(?pathwayname,"rett","i")). } ?entry a :Entry . diff --git a/examples/neXtProt/NXQ_00272.ttl b/examples/neXtProt/NXQ_00272.ttl index 6b69697b1..2356a6d81 100644 --- a/examples/neXtProt/NXQ_00272.ttl +++ b/examples/neXtProt/NXQ_00272.ttl @@ -8,7 +8,6 @@ ex:NXQ_00272 a sh:SPARQLExecutable, rdfs:comment "Proteins involved in coronaviruses/SARS-CoV-2 pathways with associated medical information"@en ; sh:prefixes _:sparql_examples_prefixes ; sh:select """PREFIX : -PREFIX dc: PREFIX dcterms: PREFIX rdfs: PREFIX wp: @@ -29,7 +28,7 @@ SELECT DISTINCT ?entry (str(?gen) AS ?gene) ?pathwayname (str(?discom) AS ?disco ?pathway wp:organism ?organism . filter(contains(str(?organism),"9606")) - ?pathway dc:title ?pathwayname . + ?pathway dcterms:title ?pathwayname . filter(regex(?pathwayname,"sars-cov-2","i")|| regex(?pathwayname,"corona","i") ). }