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22 Open 25 Closed
22 Open 25 Closed
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Issues list

Illumina _periscope.bam output file
#52 opened Jun 8, 2023 by galeoni
Missing {input.path} in reheader rule
#51 opened May 22, 2023 by ThomasBaudeau
split: <filename>.sam illegal line count
#49 opened Feb 15, 2023 by sekstephenson
2
Error when running search_for_sgRNA_illumina.py
#48 opened Feb 15, 2023 by kjshan
1
error line 16 in search_for_sgRNA_illumina.py
#47 opened Nov 30, 2022 by laurabuggiotti
2
gRNA counts for illumina data
#46 opened Sep 20, 2022 by cohenp05
1
Why is the artic package version pinned at 1.1.1?
#42 opened Mar 9, 2022 by wm75
2
snakefile error /bin/bash: bc: command not found split: invalid number of lines:
#39 opened Dec 8, 2021 by Viromic
3
UnicodeEncodeError bug Something isn't working
#36 opened Oct 5, 2021 by mbdabrowska1
@mbdabrowska1
Add support for Qiagen primers and amplicons enhancement New feature or request
#35 opened Sep 28, 2021 by mbdabrowska1
2 tasks
@mbdabrowska1
Fix tqdm for multiprocessing for ont and illumina bug Something isn't working
#31 opened Sep 17, 2021 by mbdabrowska1
@mbdabrowska1
Add citation file to point to genome research paper
#29 opened Jul 28, 2021 by mattdmem
Better discernment of actual leader/body junction, classify? enhancement New feature or request
#24 opened Jun 29, 2021 by mattdmem
@mbdabrowska1
Add normalisation to ORF1ab counts enhancement New feature or request
#22 opened Jun 29, 2021 by mattdmem
@mbdabrowska1
Investigate behaviour of primer site filtering for noncanonical sgRNA question Further information is requested
#16 opened Jun 18, 2021 by mattdmem
@mbdabrowska1
Remove human reads - Add steps to filter to only SARS-CoV-2 reads? enhancement New feature or request
#13 opened Jan 20, 2021 by mattdmem
@mbdabrowska1
1
Installation error: writing to /tmp question Further information is requested
#12 opened Jan 8, 2021 by ksw9
@mattdmem
1
ORFs not being tagged properly in the bam file bug Something isn't working
#11 opened Nov 2, 2020 by mattdmem
@mattdmem
Normalisation of amplicon based illumina data enhancement New feature or request
#9 opened Jul 24, 2020 by mattdmem v0.1.0
@mattdmem
3
Classify non-canonical sgRNA according to cell paper enhancement New feature or request
#7 opened Jul 21, 2020 by mattdmem v0.1.0
@mattdmem
Provide R code for plots and analysis enhancement New feature or request
#4 opened Jul 14, 2020 by mattdmem v0.1.0
@mbdabrowska1
3
Use spliced alignments and junction reads to quantify sgRNA enhancement New feature or request
#3 opened Jul 14, 2020 by mattdmem
1
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