From 26e7cca9c1bfd8fa8b328168cfe4974ecd796e1b Mon Sep 17 00:00:00 2001 From: sronilsson Date: Sat, 16 Nov 2024 12:37:50 -0500 Subject: [PATCH] yolo --- docs/nb/yolo_ex_2.ipynb | 27761 +--------------- ...fig_reader.rst => simba.config_reader.rst} | 0 2 files changed, 81 insertions(+), 27680 deletions(-) rename docs/{simba_config_reader.rst => simba.config_reader.rst} (100%) diff --git a/docs/nb/yolo_ex_2.ipynb b/docs/nb/yolo_ex_2.ipynb index facf79526..db49571c9 100644 --- a/docs/nb/yolo_ex_2.ipynb +++ b/docs/nb/yolo_ex_2.ipynb @@ -61,7 +61,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 4, "id": "c79f8460-7604-49cc-b849-aa31e575eb98", "metadata": {}, "outputs": [ @@ -309,7 +309,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 5, "id": "58581732-7582-406a-a0e9-a3b0515122f6", "metadata": {}, "outputs": [], @@ -323,7 +323,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 6, "id": "b6054388-b589-451b-8aac-354238cefc44", "metadata": {}, "outputs": [], @@ -335,9 +335,11 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "id": "71ff3b83-d631-45f4-b400-9cec5bcca469", - "metadata": {}, + "metadata": { + "scrolled": true + }, "outputs": [ { "name": "stdout", @@ -384,14 +386,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "\u001b[34m\u001b[1mtrain: \u001b[0mScanning /mnt/c/troubleshooting/yolo_data_split_animal/labels/train... 1953 images, 0 backgrounds, 1 corrupt: 100%|██████████| 1953/1953 [00:06<00:00, 302.80it/s]\u001b[0m" + "\u001b[34m\u001b[1mtrain: \u001b[0mScanning /mnt/c/troubleshooting/yolo_data_split_animal/labels/train... 1951 images, 0 backgrounds, 1 corrupt: 100%|██████████| 1951/1951 [00:05<00:00, 342.43it/s]\u001b[0m" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "\u001b[34m\u001b[1mtrain: \u001b[0mWARNING ⚠️ /mnt/c/troubleshooting/yolo_data_split_animal/images/train/FRR_gq_Saline_0626_24647.png: ignoring corrupt image/label: non-normalized or out of bounds coordinates [ 1.0093]\n" + "\u001b[34m\u001b[1mtrain: \u001b[0mWARNING ⚠️ /mnt/c/troubleshooting/yolo_data_split_animal/images/train/FRR_gq_Saline_0626_24648.png: ignoring corrupt image/label: non-normalized or out of bounds coordinates [ 1.0149]\n" ] }, { @@ -412,7 +414,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "\u001b[34m\u001b[1mval: \u001b[0mScanning /mnt/c/troubleshooting/yolo_data_split_animal/labels/val... 278 images, 0 backgrounds, 0 corrupt: 100%|██████████| 278/278 [00:01<00:00, 196.36it/s]\u001b[0m\n" + "\u001b[34m\u001b[1mval: \u001b[0mScanning /mnt/c/troubleshooting/yolo_data_split_animal/labels/val... 278 images, 0 backgrounds, 0 corrupt: 100%|██████████| 278/278 [00:01<00:00, 212.74it/s]\u001b[0m\n" ] }, { @@ -435,15 +437,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 1/25 2.16G 1.733 2.436 1.756 31 640: 100%|██████████| 122/122 [00:12<00:00, 10.15it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:01<00:00, 7.55it/s]" + " 1/25 2.16G 1.761 2.389 1.761 31 640: 100%|██████████| 122/122 [00:11<00:00, 10.61it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:01<00:00, 7.66it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.506 0.508 0.486 0.268\n" + " all 278 278 0.503 0.572 0.52 0.253\n" ] }, { @@ -465,45 +467,15 @@ "name": "stderr", "output_type": "stream", "text": [ - 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" all 278 278 0.639 0.681 0.693 0.359\n" + " all 278 278 0.437 0.504 0.461 0.186\n" ] }, { @@ -525,32 +497,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 4/25 2.06G 1.647 1.571 1.609 36 640: 100%|██████████| 122/122 [00:09<00:00, 12.30it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:01<00:00, 8.78it/s]\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - " all 278 278 0.527 0.781 0.667 0.326\n", - "\n", - " Epoch GPU_mem box_loss cls_loss dfl_loss Instances Size\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - " 5/25 2.06G 1.646 1.489 1.616 31 640: 100%|██████████| 122/122 [00:09<00:00, 12.21it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.22it/s]" + " 3/25 2.14G 1.698 1.723 1.67 24 640: 100%|██████████| 122/122 [00:08<00:00, 14.16it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.40it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.593 0.697 0.612 0.299\n" + " all 278 278 0.44 0.59 0.505 0.265\n" ] }, { @@ -572,15 +527,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 6/25 2.06G 1.573 1.425 1.583 40 640: 100%|██████████| 122/122 [00:09<00:00, 13.47it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 9.52it/s]" + " 4/25 2.06G 1.667 1.599 1.643 32 640: 100%|██████████| 122/122 [00:08<00:00, 14.24it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.40it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.636 0.876 0.775 0.415\n" + " all 278 278 0.593 0.808 0.696 0.438\n" ] }, { @@ -602,15 +557,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 7/25 2.06G 1.544 1.407 1.563 37 640: 100%|██████████| 122/122 [00:09<00:00, 12.36it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.20it/s]" + " 5/25 2.14G 1.615 1.498 1.591 26 640: 100%|██████████| 122/122 [00:07<00:00, 15.39it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.46it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.671 0.853 0.751 0.504\n" + " all 278 278 0.703 0.838 0.802 0.476\n" ] }, { @@ -632,15 +587,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 8/25 2.06G 1.497 1.385 1.532 34 640: 100%|██████████| 122/122 [00:09<00:00, 13.45it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.49it/s]" + " 6/25 2.06G 1.582 1.486 1.572 31 640: 100%|██████████| 122/122 [00:08<00:00, 14.09it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.54it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.708 0.819 0.793 0.537\n" + " all 278 278 0.697 0.704 0.703 0.41\n" ] }, { @@ -662,15 +617,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 9/25 2.06G 1.455 1.362 1.523 28 640: 100%|██████████| 122/122 [00:08<00:00, 14.64it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 9.75it/s]" + " 7/25 2.14G 1.547 1.439 1.541 30 640: 100%|██████████| 122/122 [00:08<00:00, 13.90it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.01it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - 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" Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.92it/s]" + " 17/25 2.14G 1.07 0.9407 1.324 14 640: 100%|██████████| 122/122 [00:08<00:00, 14.10it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 9.17it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.833 0.888 0.913 0.683\n" + " all 278 278 0.76 0.845 0.84 0.604\n" ] }, { @@ -1023,7 +948,7 @@ "name": "stderr", "output_type": "stream", "text": [ - " 21/25 2.06G 0.9773 0.8332 1.288 16 640: 100%|██████████| 122/122 [00:08<00:00, 15.22it/s]\n", + " 18/25 2.06G 1.047 0.9385 1.333 14 640: 100%|██████████| 122/122 [00:08<00:00, 14.73it/s]\n", " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.34it/s]" ] }, @@ -1031,7 +956,7 @@ "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.817 0.899 0.904 0.707\n" + " all 278 278 0.744 0.869 0.836 0.641\n" ] }, { @@ -1053,15 +978,15 @@ "name": "stderr", "output_type": "stream", "text": [ - 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" all 278 278 0.85 0.888 0.918 0.708\n" + " all 278 278 0.785 0.855 0.847 0.65\n" ] }, { @@ -1113,15 +1038,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 24/25 2.06G 0.8796 0.7599 1.223 16 640: 100%|██████████| 122/122 [00:08<00:00, 13.89it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 120.12it/s]" + " 21/25 2.14G 0.944 0.8555 1.253 14 640: 100%|██████████| 122/122 [00:08<00:00, 14.17it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.08it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.801 0.903 0.898 0.711\n" + " all 278 278 0.829 0.896 0.875 0.67\n" ] }, { @@ -1143,15 +1068,15 @@ "name": "stderr", "output_type": "stream", "text": [ - " 25/25 2.06G 0.8625 0.7458 1.212 16 640: 100%|██████████| 122/122 [00:08<00:00, 13.90it/s]\n", - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.98it/s]" + " 22/25 2.06G 0.9004 0.8363 1.23 14 640: 100%|██████████| 122/122 [00:08<00:00, 13.86it/s]\n", + " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:00<00:00, 10.15it/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - " all 278 278 0.85 0.899 0.921 0.723\n" + " all 278 278 0.805 0.876 0.893 0.696\n" ] }, { @@ -1166,29 +1091,14 @@ "output_type": "stream", "text": [ "\n", - "25 epochs completed in 0.072 hours.\n", - "Optimizer stripped from /mnt/c/troubleshooting/yolo_mdl/train/weights/last.pt, 6.2MB\n", - "Optimizer stripped from /mnt/c/troubleshooting/yolo_mdl/train/weights/best.pt, 6.2MB\n", - "\n", - "Validating /mnt/c/troubleshooting/yolo_mdl/train/weights/best.pt...\n", - "Ultralytics 8.3.19 🚀 Python-3.10.15 torch-2.5.0+cu124 CUDA:0 (NVIDIA GeForce RTX 4070, 12282MiB)\n", - "Model summary (fused): 168 layers, 3,005,843 parameters, 0 gradients, 8.1 GFLOPs\n" + " Epoch GPU_mem box_loss cls_loss dfl_loss Instances Size\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - " Class Images Instances Box(P R mAP50 mAP50-95): 100%|██████████| 9/9 [00:01<00:00, 7.52it/s]\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - " all 278 278 0.85 0.895 0.921 0.723\n", - "Speed: 0.2ms preprocess, 0.8ms inference, 0.0ms loss, 0.6ms postprocess per image\n", - "Results saved to \u001b[1m/mnt/c/troubleshooting/yolo_mdl/train\u001b[0m\n" + " 23/25 2.14G 0.8963 0.8309 1.226 16 640: 48%|████▊ | 58/122 [00:04<00:04, 14.08it/s]" ] } ], @@ -1207,27520 +1117,11 @@ "execution_count": null, "id": "182f0071-2cd5-4c21-9087-b606aa909804", "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "WARNING ⚠️ TensorRT requires GPU export, automatically assigning device=0\n", - "Ultralytics 8.3.19 🚀 Python-3.10.15 torch-2.5.0+cu124 CUDA:0 (NVIDIA GeForce RTX 4070, 12282MiB)\n", - "Model summary (fused): 168 layers, 3,005,843 parameters, 0 gradients, 8.1 GFLOPs\n", - "\n", - "\u001b[34m\u001b[1mPyTorch:\u001b[0m starting from '/mnt/c/troubleshooting/yolo_mdl/train/weights/best.pt' with input shape (1, 3, 640, 640) BCHW and output shape(s) (1, 5, 8400) (6.0 MB)\n", - "\n", - "\u001b[34m\u001b[1mONNX:\u001b[0m starting export with onnx 1.17.0 opset 19...\n", - "\u001b[34m\u001b[1mONNX:\u001b[0m slimming with onnxslim 0.1.35...\n", - "\u001b[34m\u001b[1mONNX:\u001b[0m export success ✅ 0.7s, saved as '/mnt/c/troubleshooting/yolo_mdl/train/weights/best.onnx' (11.7 MB)\n", - "\n", - "\u001b[34m\u001b[1mTensorRT:\u001b[0m starting export with TensorRT 10.5.0...\n", - "[11/16/2024-11:49:10] [TRT] [I] [MemUsageChange] Init CUDA: CPU +1, GPU +0, now: CPU 2063, GPU 1583 (MiB)\n", - "[11/16/2024-11:49:25] [TRT] [I] [MemUsageChange] Init builder kernel library: CPU +2238, GPU +426, now: CPU 4457, GPU 2009 (MiB)\n", - "[11/16/2024-11:49:25] [TRT] [I] ----------------------------------------------------------------\n", - "[11/16/2024-11:49:25] [TRT] [I] Input filename: /mnt/c/troubleshooting/yolo_mdl/train/weights/best.onnx\n", - "[11/16/2024-11:49:25] [TRT] [I] ONNX IR version: 0.0.10\n", - "[11/16/2024-11:49:25] [TRT] [I] Opset version: 19\n", - "[11/16/2024-11:49:25] [TRT] [I] Producer name: pytorch\n", - "[11/16/2024-11:49:25] [TRT] [I] Producer version: 2.5.0\n", - "[11/16/2024-11:49:25] [TRT] [I] Domain: \n", - "[11/16/2024-11:49:25] [TRT] [I] Model version: 0\n", - "[11/16/2024-11:49:25] [TRT] [I] Doc string: \n", - "[11/16/2024-11:49:25] [TRT] [I] ----------------------------------------------------------------\n", - "\u001b[34m\u001b[1mTensorRT:\u001b[0m input \"images\" with shape(1, 3, 640, 640) DataType.FLOAT\n", - "\u001b[34m\u001b[1mTensorRT:\u001b[0m output \"output0\" with shape(1, 5, 8400) DataType.FLOAT\n", - "\u001b[34m\u001b[1mTensorRT:\u001b[0m building FP32 engine as /mnt/c/troubleshooting/yolo_mdl/train/weights/best.engine\n", - "[11/16/2024-11:51:23] [TRT] [I] Local timing cache in use. Profiling results in this builder pass will not be stored.\n", - "[11/16/2024-11:52:19] [TRT] [I] Detected 1 inputs and 3 output network tensors.\n", - "[11/16/2024-11:52:20] [TRT] [I] Total Host Persistent Memory: 339424 bytes\n", - "[11/16/2024-11:52:20] [TRT] [I] Total Device Persistent Memory: 38912 bytes\n", - "[11/16/2024-11:52:20] [TRT] [I] Max Scratch Memory: 4608 bytes\n", - "[11/16/2024-11:52:20] [TRT] [I] [BlockAssignment] Started assigning block shifts. This will take 188 steps to complete.\n", - "[11/16/2024-11:52:20] [TRT] [I] [BlockAssignment] Algorithm ShiftNTopDown took 4.55696ms to assign 8 blocks to 188 nodes requiring 17204224 bytes.\n", - "[11/16/2024-11:52:20] [TRT] [I] Total Activation Memory: 17203200 bytes\n", - "[11/16/2024-11:52:20] [TRT] [I] Total Weights Memory: 14263360 bytes\n", - "[11/16/2024-11:52:20] [TRT] [I] Engine generation completed in 57.1286 seconds.\n", - "[11/16/2024-11:52:20] [TRT] [I] [MemUsageStats] Peak memory usage of TRT CPU/GPU memory allocators: CPU 1 MiB, GPU 133 MiB\n", - "[11/16/2024-11:52:20] [TRT] [I] [MemUsageStats] Peak memory usage during Engine building and serialization: CPU: 8965 MiB\n", - "\u001b[34m\u001b[1mTensorRT:\u001b[0m export success ✅ 191.0s, saved as '/mnt/c/troubleshooting/yolo_mdl/train/weights/best.engine' (17.2 MB)\n", - "\n", - "Export complete (191.3s)\n", - "Results saved to \u001b[1m/mnt/c/troubleshooting/yolo_mdl/train/weights\u001b[0m\n", - "Predict: yolo predict task=detect model=/mnt/c/troubleshooting/yolo_mdl/train/weights/best.engine imgsz=640 \n", - "Validate: yolo val task=detect model=/mnt/c/troubleshooting/yolo_mdl/train/weights/best.engine imgsz=640 data=/mnt/c/troubleshooting/yolo_data_split_animal/map.yaml \n", - "Visualize: https://netron.app\n", - "\n", - "video 1/1 (frame 1/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 2/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 3/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 4/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 5/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 2.6ms\n", - "video 1/1 (frame 6/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 2.6ms\n", - "video 1/1 (frame 7/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 2.6ms\n", - "video 1/1 (frame 8/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 9/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 10/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 11/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 12/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 13/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 2.6ms\n", - "video 1/1 (frame 14/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 2.6ms\n", - "video 1/1 (frame 15/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 16/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 2.6ms\n", - "video 1/1 (frame 17/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.5ms\n", - "video 1/1 (frame 18/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.5ms\n", - "video 1/1 (frame 19/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.5ms\n", - "video 1/1 (frame 20/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.5ms\n", - "video 1/1 (frame 21/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.5ms\n", - "video 1/1 (frame 22/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.5ms\n", - 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"video 1/1 (frame 27440/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.8ms\n", - "video 1/1 (frame 27441/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.9ms\n", - "video 1/1 (frame 27442/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27443/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 1 Animal_1, 0.9ms\n", - "video 1/1 (frame 27444/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27445/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27446/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27447/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27448/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27449/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27450/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27451/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27452/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27453/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27454/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27455/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n", - "video 1/1 (frame 27456/36200) /mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4: 448x640 2 Animal_1s, 0.9ms\n" - ] - } - ], + "outputs": [], "source": [ "#NEXT, WE USE THE TRAINED MODEL TO FIND THE ROIS IN A NEW VIDEO\n", "INFERENCE_RESULTS = \"/mnt/c/troubleshooting/yolo_results\" #DIRECTORY WHERE TO STORE THE RESULTS IN CSV FORMAT\n", - "VIDEO_PATH = r'/mnt/c/troubleshooting/mitra/project_folder/videos/501_MA142_Gi_Saline_0513.mp4' #PATH TO VIDEO TO ANALYZE\n", + "VIDEO_PATH = r'/mnt/c/troubleshooting/mitra/project_folder/videos/clipped/FRR_gq_Saline_0626.mp4' #PATH TO VIDEO TO ANALYZE\n", "inference_yolo(weights_path=os.path.join(MODEL_SAVE_DIR, 'train', 'weights', 'best.pt'), video_path=VIDEO_PATH, verbose=VERBOSE, save_dir=INFERENCE_RESULTS, gpu=True, batch_size=BATCH, interpolate=True)" ] }, @@ -28732,8 +1133,8 @@ "outputs": [], "source": [ "#FINALLY, WE VISUALIZE THE RESULTS TO CHECK THAT THE PREDICTIONS ARE ACCURATE\n", - "DATA_PATH = r\"/mnt/c/troubleshooting/yolo_results/501_MA142_Gi_CNO_0514_clipped.csv\" #PATH TO ONE OF THE CSV FILES CREATED IN THE PRIOR STEP.\n", - "VIDEO_PATH = r'/mnt/c/troubleshooting/mitra/project_folder/videos/clipped/501_MA142_Gi_CNO_0514_clipped.mp4' # PATH TO THE VIDEO REPRESENTING THE ``DATA_PATH`` FILE.\n", + "DATA_PATH = r\"/mnt/c/troubleshooting/yolo_results/FRR_gq_Saline_0626.csv\" #PATH TO ONE OF THE CSV FILES CREATED IN THE PRIOR STEP.\n", + "VIDEO_PATH = r'/mnt/c/troubleshooting/mitra/project_folder/videos/clipped/FRR_gq_Saline_0626.mp4' # PATH TO THE VIDEO REPRESENTING THE ``DATA_PATH`` FILE.\n", "SAVE_DIR = r\"/mnt/c/troubleshooting/yolo_videos\" # DIRECTORY WHERE TO SAVE THE YOLO VIDEO\n", "\n", "yolo_visualizer = YOLOVisualizer(data_path=DATA_PATH, video_path=VIDEO_PATH, save_dir=SAVE_DIR, palette='Accent', thickness=20, core_cnt=-1, verbose=False)\n", diff --git a/docs/simba_config_reader.rst b/docs/simba.config_reader.rst similarity index 100% rename from docs/simba_config_reader.rst rename to docs/simba.config_reader.rst