_config.yml

# Welcome to Jekyll!
# About Theme
#
# Yet another theme for elegant writers with modern flat style and beautiful
# night/dark mode.
#
# Website: https://github.com/jeffreytse/jekyll-theme-yat
#
# You can do anything you want, including projects for your clients, as long
# as you mention an attribution back (credit links in footer or project).
# See the LICENCE file.
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that.
#
# For technical reasons, this file is *NOT* reloaded automatically when you
# use 'bundle exec jekyll serve'. If you change this file, please restart
# the server process.
#
# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.

title: "SNU Compbio Lab"
email: "contact@seoklab.org"
author: "seoklab"

# Copyright setting
# You can use any html code, currently below placeholders are available:
# * current year: {currentYear}
# * author: {author} (Value is the same as site.author)
# * copyright: (c) - ©
# * copyleft: (cleft)
# * sound recording copyright: (p) - ℗
#
# For example:
#   "Copyright (c) 2017-{currentYear} <a href="https://example.com">{author}</a>"
#   "Copyright © 2017-2021 Foobar"
#
copyright:
  'Copyright (c) 2022-{currentYear} {author}, licensed under <a
  href="https://creativecommons.org/licenses/by-sa/4.0" target="_blank"
  rel="license noopener noreferrer" style="display:inline-block;">CC BY-SA 4.0
  International</a>.'
copyright-icons:
  - fa-creative-commons
  - fa-creative-commons-by
  - fa-creative-commons-sa

description:
  "Seoul National University Lab of Computational Biology and Biomolecular
  Engineering"
url: "https://seoklab.org"
favicon: "/assets/images/logo.png"

# Yat date format
# refer to https://shopify.github.io/liquid/filters/date/ if you want to customize this
yat:
  date_format: "%b %Y"

last-modified-at:
  date_format: "%F, %T"

autolink_email:
  link_attr: class="email-link"
  escape: true

# If you want more debug log, you can set true
# debug: false

# If you don't want transparent header, you can set false
# header_transparent: true

# If you want to change the content width, you can set to another value
# content_width: "920px"

# Google analytics - GA4
# google_analytics: [Measurement ID]
# enableDNT: "false"

# If you want to generate website sitemap, you can set true
# sitemap: true

# If you want to change site language, you can set lang option
lang: "en"
timezone: Asia/Seoul

# Translate languges
# langs refer to https://cloud.google.com/translate/docs/languages
# translate_langs:
#   - lang: en
#     img: https://cdn.countryflags.com/thumbs/united-states-of-america/flag-400.png
#     text: English
#
#   - lang: fr
#     img: https://cdn.countryflags.com/thumbs/france/flag-400.png
#     text: French
#
#   - lang: zh-CN
#     img: https://cdn.countryflags.com/thumbs/china/flag-400.png
#     text: Chinese(Simple)
#
#   - lang: ja
#     img: https://cdn.countryflags.com/thumbs/japan/flag-400.png
#     text: Japanese
#
#   - lang: ko
#     img: https://cdn.countryflags.com/thumbs/south-korea/flag-400.png
#     text: Korean
#
#   - lang: ru
#     img: https://cdn.countryflags.com/thumbs/russia/flag-400.png
#     text: Russian

# You can choose a theme color
# Default theme colors as below:
# coolblack: #090a0b
# spacegrey: #353535
# snowwhite: #ffffff
#
# theme_color: snowwhite
#
# Custom color as below:
# theme_color: "#882250"

# You can choose a brand color
# Default brand colors as below:
# orangered: #ff5100
# greatgold: #f2cb05
# greenblue: #389092
#
# brand_color: orangered
#
# Custom color as below:
# brand_color: "#1a8e42"

# You can custom selection style
# selection:
#   color: "#ff00ff"
#   background_color: "yellow"

# Night/Dark mode
# Default mode is "auto", "auto" is for auto nightshift
# (19:00 - 07:00), "manual" is for manual toggle, and
# "on/off" is for default on/off.
#
# Whatever the user's choice is, it will supersede the
# default setting of the site and be kept during the
# visit (session). Only the dark mode setting is"manual",
# it will be always kept on every visit (i.e. no matter
# the browser is closed or not)
#
# night_mode: "auto"

# Code badge setting
# You can enable or disable the code badge and so on
# code_badge:
#   enabled: "true"
#   color: "#fff"
#   background_color: "#ff4e00"
#   text_transform: "uppercase"  # ("uppercase", "lowercase", "capitalize")

# If you want to link only specific pages in your header, uncomment
# this and add the path to the pages in order as they should show up
header_pages:
  - notice.md
  - blog.md
  - members.md
  - research.md
  - publications/index.html

header_ext_links:
  - title: photo
    url: https://cloud.seoklab.org/photo/#/shared_space/folder/107
  - title: GalaxyWeb
    url: https://galaxy.seoklab.org
  - title: github
    url: https://github.com/seoklab

collections:
  notice:
    output: true
  blog:
    output: true

# Page default value
defaults:
  - scope:
      path: _posts
      type: posts
    values:
      layout: post
      permalink: "/:categories/:year/:month/:title:output_ext"
  - scope:
      path: _notice
      type: notice
    values:
      layout: post
      date_format: "%b %e, %Y"
      use_mtime: true
  - scope:
      path: _blog
      type: blog
    values:
      layout: post
      date_format: "%b %e, %Y"
      use_mtime: true

exclude:
  - "*README.md"

# Banner default settings
# These banner settings are for global banner default, but you can also
# config it by the front matter for one specific post
# banner:
#   height: "200px"         # Banner default height
#   opacity: 0.5            # Banner opacity (100% is 1.0)
#   video: null             # Video banner source
#   loop: true              # Video loop
#   volume: 0               # Video volume (100% is 1.0)
#   image: null             # Image banner source
#   start_at: 0             # Video start time
#   background: "rgba(0, 0, 0, 0.8)"  # Banner background (Could be a image)
#   min_height: null        # Banner minium height
#   heading_style: null     # Custom heading style (e.g. "font-weight: bold; text-decoration: underline")
#   subheading_style: null  # Custom subheading style (e.g. color: gold)

# Excerpt settings
excerpt:
  text_size: 100

# Pagination setting
paginate: 10
paginate_path: "/publications/page:num/"

# Photo previewer settings (PhotoSwipe 5)
# the options please refer to: https://photoswipe.com/options/
# photo_previewer:
#  gallery: "section.main"
#  children: "a.photo-swipe"
#  bgOpacity: 0.8
#  padding:
#    top: 20
#    bottom: 40
#    left: 100
#    right: 100

# Click to top settings
# click_to_top:
#   light:
#     background_color: "white"
#     color: "#454545"
#   dark:
#     background_color: "#34323d"
#     color: "#bbb"

# Disqus comments
# disqus:
#   shortname: "Your Disqus username"

# Gitment comments
# gitment:
#   username: "Your GitHub username"
#   repo: "The repo to store comments"
#   client_id: "Your client ID"
#   client_secret: "Your client secret"
#   redirect_uri: "Your redirect url"   # If you use a custom domain name

# Utterances comments
# See https://utteranc.es/
# set follow_site_theme true to make utterances' theme follow the site's

# utterances:
#   repo: "owner/repo"
#   issue_term: "title"
#   label: "utterances comment"
#   theme: "github-light"
#   follow_site_theme: true

# Build settings
theme: "jekyll-theme-yat"
future: true
# highlighter: none
markdown: kramdown
kramdown:
  input: GFM
  entity_output: as_input

plugins:
  - jekyll-last-modified-at
  - jekyll-redirect-from
  - jekyll-include-cache
  - jekyll-autolink_email