nextflow.config

/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    sdsc-ordes/nds-lucid-graphdb-loader Nextflow config file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Default config options for all compute environments
----------------------------------------------------------------------------------------
*/

// Global default params, used in configs
params {

    // Workflow flags
    // params can be overriden using CLI flags (e.g. --backup_dir 'ext/backup')

    input_dir = '/data/out-ingest'
    backup_dir = '/data/backup/'
    graphdb_dir = '/data/graphdb-import'
    graphdb_url = 'lucid-db:7000'
    graphdb_repo = 'lucid'
    watch = true
    log_dir = "logs"
    max_backups = 1

}

// Load base.config by default for all pipelines
includeConfig 'conf/base.config'
includeConfig 'conf/log.config'

profiles {
    local { includeConfig 'conf/local.config'      }
    test  { includeConfig 'conf/test.config'      }
}

// Capture exit codes from upstream processes when piping
process.shell = ['/bin/bash', '-euo', 'pipefail']

manifest {
    name            = 'sdsc-ordes/nds-lucid-graphdb-loader'
    author          = """Stefan Milosavljevic and Cyril Matthey-Doret"""
    homePage        = 'https://github.com/sdsc-ordes/nds-lucid-graphdb-loader'
    description     = """Load RDF data into a GraphDB instance, handling backups and failures."""
    mainScript      = 'main.nf'
    nextflowVersion = '!>=22.10.1'
    version         = '1.0dev'
    doi             = ''
}