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containerOptions "--entrypoint ''" is not working with apptainer or singularity. #63

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gagnonanthony opened this issue Dec 4, 2024 · 0 comments · May be fixed by #77
Open

containerOptions "--entrypoint ''" is not working with apptainer or singularity. #63

gagnonanthony opened this issue Dec 4, 2024 · 0 comments · May be fixed by #77
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hackathon

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@gagnonanthony
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--entrypoint is not a valid argument for either apptainer or singularity. Running any modules with this config returns an error. We should make it specific to the docker engine, I've tested this solution and it works for now:

    containerOptions {
        (workflow.containerEngine == 'docker') ? '--entrypoint ""': ''
    }
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@arnaudbore @gagnonanthony