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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "sc-toolbox"
version = "0.12.3" # <<COOKIETEMPLE_FORCE_BUMP>>
description = "A collection of project templates and useful code snippets for single-cell data analysis with Scanpy."
authors = ["Lukas Heumos <[email protected]>"]
license = "MIT"
readme = "README.rst"
homepage = "https://github.com/schillerlab/sc-toolbox"
repository = "https://github.com/schillerlab/sc-toolbox"
documentation = "https://sc-toolbox.readthedocs.io"
classifiers = [
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
]
[tool.poetry.dependencies]
python = ">=3.9.0,<4"
rich = ">=10.1.0"
PyYAML = ">=5.4.1"
Jinja2 = ">=2.11.3"
questionary = ">=1.9.0"
cookiecutter = ">=1.7.2"
matplotlib = ">=3.4.1"
scanpy = ">=1.7.2"
seaborn = ">=0.11.1"
pandas = ">=1.2.4"
scipy = ">=1.6.3"
scikit-learn = ">=0.24.1"
typing-extensions = ">=3.10.0"
adjustText = ">=0.7.3"
pypi-latest = ">=0.1.2"
[tool.poetry.dev-dependencies]
pytest = "^6.2.4"
coverage = {extras = ["toml"], version = "^6.3"}
safety = "^1.9.0"
mypy = "^0.931"
typeguard = "^2.13.3"
xdoctest = {extras = ["colors"], version = "^0.15.5"}
sphinx = ">=3.5.4"
sphinx-autobuild = ">=2021.3.14"
pre-commit = "^2.17.0"
flake8 = ">=3.9.2"
black = "^22.6.0"
flake8-bandit = ">=2.1.2"
flake8-bugbear = ">=21.4.3"
flake8-docstrings = ">=1.5.0"
flake8-rst-docstrings = ">=0.2.3"
pep8-naming = ">=0.11.1"
pre-commit-hooks = "^4.1.0"
sphinx-rtd-theme = ">=0.5.0"
sphinx-rtd-dark-mode = "^1.2.3"
sphinx-click = ">=2.5.0"
Pygments = ">=2.9.0"
types-pkg-resources = "^0.1.3"
types-requests = "^2.27.11"
types-attrs = "^19.1.0"
requests = "^2.28.0"
nbsphinx = "^0.8.9"
sphinx-gallery = "^0.10.1"
sphinx-autodoc-typehints = "^1.18.3"
sphinx-last-updated-by-git = "^0.3.2"
sphinx-automodapi = "^0.14.1"
sphinx-copybutton = "^0.5.0"
pyupgrade = "^2.34.0"
furo = "^2022.6.21"
myst-parser = "^0.18.0"
sphinx-remove-toctrees = "^0.0.3"
sphinx_design = "^0.2.0"
sphinxext-opengraph = "^0.6.3"
[tool.poetry.scripts]
sc-toolbox = "sc_toolbox.__main__:main"
[tool.poetry.group.dev.dependencies]
mypy = "^1.3.0"
[tool.black]
line-length = 120
[tool.mypy]
strict = false
pretty = true
show_column_numbers = true
show_error_codes = true
show_error_context = true
ignore_missing_imports = true
[tool.coverage.paths]
source = ["sc_toolbox", "*/site-packages"]
[tool.coverage.run]
branch = true
source = ["sc_toolbox"]
[tool.coverage.report]
show_missing = true
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"