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R_NicheNet_env.yml
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R_NicheNet_env.yml
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name: niche_fibrosis_env_R
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- anyio=2.2.0=py39hf3d152e_0
- argon2-cffi=20.1.0=py39h3811e60_2
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- binutils_impl_linux-64=2.35.1=h193b22a_2
- binutils_linux-64=2.35=h67ddf6f_30
- bioconductor-annotationdbi=1.52.0=r40hdfd78af_1
- bioconductor-biobase=2.50.0=r40hd029910_1
- bioconductor-biocgenerics=0.36.0=r40hdfd78af_1
- bioconductor-biostrings=2.58.0=r40hd029910_1
- bioconductor-iranges=2.24.1=r40hd029910_0
- bioconductor-keggrest=1.30.1=r40hdfd78af_0
- bioconductor-limma=3.46.0=r40hd029910_1
- bioconductor-org.hs.eg.db=3.12.0=r40hdfd78af_1
- bioconductor-s4vectors=0.28.1=r40hd029910_0
- bioconductor-xvector=0.30.0=r40hd029910_1
- bioconductor-zlibbioc=1.36.0=r40hd029910_1
- bleach=3.3.0=pyh44b312d_0
- bwidget=1.9.14=ha770c72_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2021.10.8=ha878542_0
- cairo=1.16.0=h6cf1ce9_1008
- certifi=2021.10.8=py39hf3d152e_1
- cffi=1.14.5=py39he32792d_0
- colormath=3.0.0=py_2
- curl=7.76.1=h979ede3_1
- decorator=5.0.7=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- deprecation=2.1.0=pyh9f0ad1d_0
- entrypoints=0.3=pyhd8ed1ab_1003
- fontconfig=2.13.1=hba837de_1005
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=9.3.0=h70c0ae5_19
- gcc_linux-64=9.3.0=hf25ea35_30
- gettext=0.19.8.1=h0b5b191_1005
- gfortran_impl_linux-64=9.3.0=hc4a2995_19
- gfortran_linux-64=9.3.0=hdc58fab_30
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.6=he838d99_2
- gxx_impl_linux-64=9.3.0=hd87eabc_19
- gxx_linux-64=9.3.0=h3fbe746_30
- harfbuzz=2.8.0=h83ec7ef_1
- icu=68.1=h58526e2_0
- idna=3.1=pyhd3deb0d_0
- importlib-metadata=4.0.1=py39hf3d152e_0
- ipykernel=5.5.3=py39hef51801_0
- ipython=7.22.0=py39hef51801_0
- ipython_genutils=0.2.0=py_1
- jedi=0.18.0=py39hf3d152e_2
- jinja2=2.11.3=pyh44b312d_0
- jpeg=9d=h36c2ea0_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter-packaging=0.9.2=pyhd8ed1ab_0
- jupyter-resource-usage=0.6.0=pyhd8ed1ab_0
- jupyter_client=6.1.12=pyhd8ed1ab_0
- jupyter_core=4.7.1=py39hf3d152e_0
- jupyter_server=1.6.4=py39hf3d152e_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- kernel-headers_linux-64=2.6.32=h77966d4_13
- krb5=1.17.2=h926e7f8_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libcurl=7.76.1=hc4aaa36_1
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc-devel_linux-64=9.3.0=h7864c58_19
- libgcc-ng=9.3.0=h2828fa1_19
- libgfortran-ng=9.3.0=hff62375_19
- libgfortran5=9.3.0=hff62375_19
- libgit2=1.1.0=h3974521_1
- libglib=2.68.1=h3e27bee_0
- libgomp=9.3.0=h2828fa1_19
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=8_openblas
- libnghttp2=1.43.0=h812cca2_0
- libopenblas=0.3.12=pthreads_h4812303_1
- libpng=1.6.37=h21135ba_2
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-devel_linux-64=9.3.0=hb016644_19
- libstdcxx-ng=9.3.0=h6de172a_19
- libtiff=4.2.0=hdc55705_1
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.0=h7f98852_2
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.10=h72842e0_4
- lz4-c=1.9.3=h9c3ff4c_0
- make=4.3=hd18ef5c_1
- markupsafe=1.1.1=py39h3811e60_3
- mistune=0.8.4=py39h3811e60_1003
- nbclient=0.5.3=pyhd8ed1ab_0
- nbconvert=6.0.7=py39hf3d152e_3
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.1=pyhd8ed1ab_0
- networkx=2.3=py_0
- notebook=6.3.0=pyha770c72_1
- numpy=1.20.2=py39hdbf815f_0
- openssl=1.1.1k=h7f98852_0
- packaging=20.9=pyh44b312d_0
- pandoc=2.12=h7f98852_0
- pandocfilters=1.4.2=py_1
- pango=1.48.4=hb8ff022_0
- parso=0.8.2=pyhd8ed1ab_0
- pcre=8.44=he1b5a44_0
- pcre2=10.36=h032f7d1_1
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pip=21.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- prometheus_client=0.10.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.18=pyha770c72_0
- psutil=5.8.0=py39h3811e60_1
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.8.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py39h3811e60_2
- python=3.9.2=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.9=1_cp39
- pyzmq=22.0.3=py39h37b5a0c_1
- r-abind=1.4_5=r40h6115d3f_1003
- r-askpass=1.1=r40hcdcec82_2
- r-assertthat=0.2.1=r40h6115d3f_2
- r-backports=1.2.1=r40hcfec24a_0
- r-base=4.0.3=h349a78a_8
- r-base64enc=0.1_3=r40hcdcec82_1004
- r-bh=1.75.0_0=r40hc72bb7e_0
- r-bit=4.0.4=r40hcfec24a_0
- r-bit64=4.0.5=r40hcfec24a_0
- r-bitops=1.0_7=r40hcfec24a_0
- r-blob=1.2.1=r40h6115d3f_1
- r-boot=1.3_27=r40hc72bb7e_0
- r-brew=1.0_6=r40h6115d3f_1003
- r-brio=1.1.2=r40hcfec24a_0
- r-broom=0.7.6=r40hc72bb7e_0
- r-bslib=0.2.4=r40hc72bb7e_0
- r-cachem=1.0.4=r40hcfec24a_0
- r-callr=3.7.0=r40hc72bb7e_0
- r-caret=6.0_86=r40hcdcec82_2
- r-catools=1.18.2=r40h03ef668_0
- r-cellranger=1.1.0=r40h6115d3f_1003
- r-circlize=0.4.13=r40hc72bb7e_0
- r-class=7.3_18=r40hcfec24a_0
- r-cli=2.5.0=r40hc72bb7e_0
- r-clipr=0.7.1=r40h142f84f_0
- r-cluster=2.1.1=r40h859d828_0
- r-codetools=0.2_18=r40hc72bb7e_0
- r-colorspace=2.0_0=r40h9e2df91_0
- r-commonmark=1.7=r40hcdcec82_1002
- r-covr=3.5.1=r40h0357c0b_0
- r-cowplot=1.1.1=r40hc72bb7e_0
- r-cpp11=0.2.7=r40hc72bb7e_0
- r-crayon=1.4.1=r40hc72bb7e_0
- r-credentials=1.3.0=r40h6115d3f_0
- r-crosstalk=1.1.1=r40hc72bb7e_0
- r-crul=1.1.0=r40h785f33e_0
- r-curl=4.3=r40hcfec24a_1
- r-data.table=1.14.0=r40hcfec24a_0
- r-dbi=1.1.1=r40hc72bb7e_0
- r-dbplyr=2.1.1=r40hc72bb7e_0
- r-deldir=0.2_10=r40h859d828_0
- r-desc=1.3.0=r40hc72bb7e_0
- r-devtools=2.4.0=r40hc72bb7e_0
- r-diffobj=0.3.3=r40hcfec24a_0
- r-digest=0.6.27=r40h1b71b39_0
- r-dplyr=1.0.5=r40h03ef668_0
- r-dqrng=0.2.1=r40h0357c0b_2
- r-dt=0.18=r40hc72bb7e_0
- r-dtplyr=1.1.0=r40hc72bb7e_0
- r-ellipsis=0.3.2=r40hcfec24a_0
- r-essentials=4.0=r40_2002
- r-evaluate=0.14=r40h6115d3f_2
- r-fansi=0.4.2=r40hcfec24a_0
- r-farver=2.1.0=r40h03ef668_0
- r-fastmap=1.1.0=r40h03ef668_0
- r-fitdistrplus=1.1_3=r40hc72bb7e_0
- r-fnn=1.1.3=r40h0357c0b_2
- r-forcats=0.5.1=r40hc72bb7e_0
- r-foreach=1.5.1=r40h142f84f_0
- r-foreign=0.8_81=r40hcfec24a_0
- r-formatr=1.9=r40hc72bb7e_0
- r-fs=1.5.0=r40h0357c0b_0
- r-future=1.21.0=r40hc72bb7e_0
- r-future.apply=1.7.0=r40hc72bb7e_0
- r-gargle=1.1.0=r40hc72bb7e_0
- r-generics=0.1.0=r40hc72bb7e_0
- r-gert=1.3.0=r40hbd84cd2_0
- r-ggplot2=3.3.3=r40hc72bb7e_0
- r-ggrepel=0.9.1=r40h03ef668_0
- r-ggridges=0.5.3=r40hc72bb7e_0
- r-ggsci=2.9=r40hc72bb7e_1003
- r-gh=1.2.1=r40hc72bb7e_0
- r-gistr=0.9.0=r40h6115d3f_0
- r-git2r=0.28.0=r40hf628c3e_0
- r-gitcreds=0.1.1=r40hc72bb7e_0
- r-glmnet=4.1_1=r40h859d828_0
- r-globaloptions=0.1.2=r40ha770c72_0
- r-globals=0.14.0=r40hc72bb7e_0
- r-glue=1.4.2=r40hcfec24a_0
- r-goftest=1.2_2=r40hcdcec82_1
- r-googledrive=1.0.1=r40h6115d3f_1
- r-googlesheets4=0.3.0=r40hc72bb7e_0
- r-gower=0.2.2=r40hcdcec82_0
- r-gplots=3.1.1=r40hc72bb7e_0
- r-gridextra=2.3=r40h6115d3f_1003
- r-gtable=0.3.0=r40h6115d3f_3
- r-gtools=3.8.2=r40hcdcec82_1
- r-haven=2.4.1=r40h2713e49_0
- r-hexbin=1.28.2=r40h859d828_0
- r-highr=0.9=r40hc72bb7e_0
- r-hms=1.0.0=r40hc72bb7e_0
- r-htmltools=0.5.1.1=r40h03ef668_0
- r-htmlwidgets=1.5.3=r40hc72bb7e_0
- r-httpcode=0.3.0=r40_1
- r-httpuv=1.6.0=r40h03ef668_0
- r-httr=1.4.2=r40h6115d3f_0
- r-ica=1.0_2=r40h6115d3f_2
- r-ids=1.0.1=r40h6115d3f_1
- r-igraph=1.2.6=r40hfbf21e4_1
- r-ini=0.3.1=r40h6115d3f_1003
- r-ipred=0.9_11=r40hcfec24a_0
- r-irdisplay=1.0=r40hd8ed1ab_0
- r-irkernel=1.1.1=r40h6115d3f_0
- r-irlba=2.3.3=r40h7fa42b6_3
- r-isoband=0.2.4=r40h03ef668_0
- r-iterators=1.0.13=r40h142f84f_0
- r-jquerylib=0.1.4=r40hc72bb7e_0
- r-jsonlite=1.7.2=r40hcfec24a_0
- r-kernsmooth=2.23_18=r40h742201e_0
- r-knitr=1.31=r40hc72bb7e_0
- r-labeling=0.4.2=r40h142f84f_0
- r-later=1.2.0=r40h03ef668_0
- r-lattice=0.20_41=r40hcfec24a_3
- r-lava=1.6.9=r40hc72bb7e_0
- r-lazyeval=0.2.2=r40hcdcec82_2
- r-leiden=0.3.7=r40hc72bb7e_0
- r-lifecycle=1.0.0=r40hc72bb7e_0
- r-listenv=0.8.0=r40h6115d3f_1
- r-lmtest=0.9_38=r40h580db52_1
- r-lsei=1.3_0=r40h86c2bf4_1
- r-lubridate=1.7.10=r40h03ef668_0
- r-magrittr=2.0.1=r40hcfec24a_1
- r-maps=3.3.0=r40hcdcec82_1004
- r-markdown=1.1=r40hcfec24a_1
- r-mass=7.3_53.1=r40hcfec24a_0
- r-matrix=1.3_2=r40he454529_0
- r-matrixstats=0.58.0=r40hcfec24a_0
- r-memoise=2.0.0=r40hc72bb7e_0
- r-mgcv=1.8_34=r40he454529_0
- r-mime=0.10=r40hcfec24a_0
- r-miniui=0.1.1.1=r40h6115d3f_1002
- r-modelmetrics=1.2.2.2=r40h0357c0b_1
- r-modelr=0.1.8=r40h6115d3f_0
- r-munsell=0.5.0=r40h6115d3f_1003
- r-nlme=3.1_152=r40h859d828_0
- r-nnet=7.3_15=r40hcfec24a_0
- r-npsurv=0.5_0=r40h6115d3f_0
- r-numderiv=2016.8_1.1=r40h6115d3f_3
- r-openssl=1.4.3=r40he5c4762_0
- r-parallelly=1.24.0=r40hc72bb7e_0
- r-patchwork=1.1.1=r40hc72bb7e_0
- r-pbapply=1.4_3=r40h6115d3f_0
- r-pbdzmq=0.3_5=r40h42bf92c_1
- r-pillar=1.6.2=r40hc72bb7e_0
- r-pkgbuild=1.2.0=r40hc72bb7e_0
- r-pkgconfig=2.0.3=r40h6115d3f_1
- r-pkgload=1.2.1=r40h03ef668_0
- r-plogr=0.2.0=r40hc72bb7e_1003
- r-plotly=4.9.3=r40hc72bb7e_0
- r-plotrix=3.8_2=r40hc72bb7e_0
- r-plyr=1.8.6=r40h0357c0b_1
- r-png=0.1_7=r40hcdcec82_1004
- r-polyclip=1.10_0=r40h0357c0b_2
- r-praise=1.0.0=r40h6115d3f_1004
- r-prettyunits=1.1.1=r40h6115d3f_1
- r-proc=1.17.0.1=r40h03ef668_0
- r-processx=3.5.1=r40hcfec24a_0
- r-prodlim=2019.11.13=r40h0357c0b_1
- r-progress=1.2.2=r40h6115d3f_2
- r-promises=1.2.0.1=r40h03ef668_0
- r-pryr=0.1.4=r40h0357c0b_1004
- r-ps=1.6.0=r40hcfec24a_0
- r-purrr=0.3.4=r40hcdcec82_1
- r-quantmod=0.4.18=r40hc72bb7e_0
- r-r6=2.5.0=r40hc72bb7e_0
- r-randomforest=4.6_14=r40h580db52_1004
- r-rann=2.6.1=r40h0357c0b_2
- r-rappdirs=0.3.3=r40hcfec24a_0
- r-rbokeh=0.5.1=r40h6115d3f_0
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