forked from niklaslang/PCLS_perturbations
-
Notifications
You must be signed in to change notification settings - Fork 1
/
R_DEseq2_env.yml
343 lines (343 loc) · 11.5 KB
/
R_DEseq2_env.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
name: niche_fibrosis_env_R_DEseq2
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- anyio=3.4.0=py310hff52083_0
- argon2-cffi=21.1.0=py310h6acc77f_2
- async_generator=1.10=py_0
- attrs=21.2.0=pyhd8ed1ab_0
- babel=2.9.1=pyh44b312d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_2
- bioconductor-annotate=1.72.0=r41hdfd78af_0
- bioconductor-annotationdbi=1.56.1=r41hdfd78af_0
- bioconductor-biobase=2.54.0=r41hd029910_0
- bioconductor-biocgenerics=0.40.0=r41hdfd78af_0
- bioconductor-biocparallel=1.28.0=r41h399db7b_0
- bioconductor-biostrings=2.62.0=r41hd029910_0
- bioconductor-delayedarray=0.20.0=r41hd029910_0
- bioconductor-deseq2=1.34.0=r41h399db7b_0
- bioconductor-genefilter=1.76.0=r41hba52eb8_0
- bioconductor-geneplotter=1.72.0=r41hdfd78af_0
- bioconductor-genomeinfodb=1.30.0=r41hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.7=r41hdfd78af_1
- bioconductor-genomicranges=1.46.0=r41hd029910_0
- bioconductor-iranges=2.28.0=r41hd029910_0
- bioconductor-keggrest=1.34.0=r41hdfd78af_0
- bioconductor-matrixgenerics=1.6.0=r41hdfd78af_0
- bioconductor-s4vectors=0.32.0=r41hd029910_0
- bioconductor-summarizedexperiment=1.24.0=r41hdfd78af_0
- bioconductor-xvector=0.34.0=r41hd029910_0
- bioconductor-zlibbioc=1.40.0=r41hd029910_0
- bleach=4.1.0=pyhd8ed1ab_0
- brotlipy=0.7.0=py310h6acc77f_1003
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cairo=1.16.0=ha00ac49_1009
- certifi=2021.10.8=py310hff52083_1
- cffi=1.15.0=py310h0fdd8cc_0
- charset-normalizer=2.0.9=pyhd8ed1ab_0
- cryptography=36.0.0=py310h685ca39_0
- curl=7.80.0=h2574ce0_0
- debugpy=1.5.1=py310h122e73d_0
- decorator=5.1.0=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.3=pyhd8ed1ab_1003
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=9.4.0=h03d3576_11
- gcc_linux-64=9.4.0=h391b98a_2
- gettext=0.19.8.1=h73d1719_1008
- gfortran_impl_linux-64=9.4.0=h0003116_11
- gfortran_linux-64=9.4.0=hf0ab688_2
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=9.4.0=h03d3576_11
- gxx_linux-64=9.4.0=h0316aca_2
- harfbuzz=3.1.2=hb4a5f5f_0
- icu=69.1=h9c3ff4c_0
- idna=3.1=pyhd3deb0d_0
- importlib-metadata=4.8.2=py310hff52083_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- ipykernel=6.6.0=py310hfdc917e_0
- ipython=7.30.1=py310hff52083_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jedi=0.18.1=py310hff52083_0
- jinja2=3.0.3=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.2.1=pyhd8ed1ab_0
- jupyter-resource-usage=0.6.1=pyhd8ed1ab_0
- jupyter_client=7.1.0=pyhd8ed1ab_0
- jupyter_core=4.9.1=py310hff52083_1
- jupyter_server=1.13.0=pyhd8ed1ab_0
- jupyterlab=3.2.4=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=2.8.2=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- krb5=1.19.2=hcc1bbae_3
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=12_linux64_openblas
- libcblas=3.9.0=12_linux64_openblas
- libcurl=7.80.0=h2574ce0_0
- libdeflate=1.8=h7f98852_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=9.4.0=hd854feb_11
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=11.2.0=h69a702a_11
- libgfortran5=11.2.0=h5c6108e_11
- libglib=2.70.2=h174f98d_0
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=12_linux64_openblas
- libnghttp2=1.43.0=h812cca2_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.37=h21135ba_2
- libsanitizer=9.4.0=h79bfe98_11
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-devel_linux-64=9.4.0=hd854feb_11
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtiff=4.3.0=h6f004c6_2
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.1=h7f98852_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.12=h885dcf4_1
- libzlib=1.2.11=h36c2ea0_1013
- lz4-c=1.9.3=h9c3ff4c_1
- make=4.3=hd18ef5c_1
- markupsafe=2.0.1=py310h6acc77f_1
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- mistune=0.8.4=py310h6acc77f_1005
- nbclassic=0.3.4=pyhd8ed1ab_0
- nbclient=0.5.9=pyhd8ed1ab_0
- nbconvert=6.3.0=py310hff52083_1
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.4=pyhd8ed1ab_0
- notebook=6.4.6=pyha770c72_0
- openssl=1.1.1l=h7f98852_0
- packaging=21.3=pyhd8ed1ab_0
- pandoc=2.16.2=h7f98852_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.48.10=h54213e6_2
- parso=0.8.3=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pip=21.3.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- prometheus_client=0.12.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.23=pyha770c72_0
- psutil=5.8.0=py310h6acc77f_2
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.10.0=pyhd8ed1ab_0
- pyopenssl=21.0.0=pyhd8ed1ab_0
- pyparsing=3.0.6=pyhd8ed1ab_0
- pyrsistent=0.18.0=py310h6acc77f_0
- pysocks=1.7.1=py310hff52083_4
- python=3.10.0=h62f1059_3_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.10=2_cp310
- pytz=2021.3=pyhd8ed1ab_0
- pyzmq=22.3.0=py310h675a958_1
- r-askpass=1.1=r41hcfec24a_2
- r-assertthat=0.2.1=r41hc72bb7e_2
- r-backports=1.4.0=r41hcfec24a_0
- r-base=4.1.1=hde4fec0_2
- r-base64enc=0.1_3=r41hcfec24a_1004
- r-bh=1.75.0_0=r41hc72bb7e_0
- r-bit=4.0.4=r41hcfec24a_0
- r-bit64=4.0.5=r41hcfec24a_0
- r-bitops=1.0_7=r41hcfec24a_0
- r-blob=1.2.2=r41hc72bb7e_0
- r-brio=1.1.3=r41hcfec24a_0
- r-broom=0.7.10=r41hc72bb7e_0
- r-cachem=1.0.6=r41hcfec24a_0
- r-callr=3.7.0=r41hc72bb7e_0
- r-cellranger=1.1.0=r41hc72bb7e_1003
- r-cli=3.1.0=r41h03ef668_0
- r-clipr=0.7.1=r41hc72bb7e_0
- r-colorspace=2.0_2=r41hcfec24a_0
- r-corrplot=0.92=r41hc72bb7e_0
- r-cpp11=0.4.2=r41hc72bb7e_0
- r-crayon=1.4.2=r41hc72bb7e_0
- r-curl=4.3.2=r41hcfec24a_0
- r-data.table=1.14.2=r41hcfec24a_0
- r-dbi=1.1.1=r41hc72bb7e_0
- r-dbplyr=2.1.1=r41hc72bb7e_0
- r-desc=1.4.0=r41hc72bb7e_0
- r-diffobj=0.3.5=r41hcfec24a_0
- r-digest=0.6.29=r41h03ef668_0
- r-dplyr=1.0.7=r41h03ef668_0
- r-dtplyr=1.2.0=r41hc72bb7e_0
- r-ellipsis=0.3.2=r41hcfec24a_0
- r-evaluate=0.14=r41hc72bb7e_2
- r-fansi=0.4.2=r41hcfec24a_0
- r-farver=2.1.0=r41h03ef668_0
- r-fastmap=1.1.0=r41h03ef668_0
- r-forcats=0.5.1=r41hc72bb7e_0
- r-formatr=1.11=r41hc72bb7e_0
- r-fs=1.5.1=r41h03ef668_0
- r-futile.logger=1.4.3=r41hc72bb7e_1003
- r-futile.options=1.0.1=r41hc72bb7e_1002
- r-gargle=1.2.0=r41hc72bb7e_0
- r-generics=0.1.1=r41hc72bb7e_0
- r-ggplot2=3.3.5=r41hc72bb7e_0
- r-glue=1.5.1=r41hcfec24a_0
- r-googledrive=2.0.0=r41hc72bb7e_0
- r-googlesheets4=1.0.0=r41h785f33e_0
- r-gridextra=2.3=r41hc72bb7e_1003
- r-gtable=0.3.0=r41hc72bb7e_3
- r-haven=2.4.3=r41h2713e49_0
- r-highr=0.9=r41hc72bb7e_0
- r-hms=1.1.1=r41hc72bb7e_0
- r-htmltools=0.5.2=r41h03ef668_0
- r-httr=1.4.2=r41hc72bb7e_0
- r-ids=1.0.1=r41hc72bb7e_1
- r-irdisplay=1.0=r41hd8ed1ab_0
- r-irkernel=1.2=r41hc72bb7e_0
- r-isoband=0.2.5=r41h03ef668_0
- r-jquerylib=0.1.4=r41hc72bb7e_0
- r-jsonlite=1.7.2=r41hcfec24a_0
- r-knitr=1.35=r41hc72bb7e_0
- r-labeling=0.4.2=r41hc72bb7e_0
- r-lambda.r=1.2.4=r41hc72bb7e_1
- r-lattice=0.20_45=r41hcfec24a_0
- r-lifecycle=1.0.1=r41hc72bb7e_0
- r-locfit=1.5_9.4=r41hcfec24a_1
- r-lubridate=1.8.0=r41h03ef668_0
- r-magrittr=2.0.1=r41hcfec24a_1
- r-markdown=1.1=r41hcfec24a_1
- r-mass=7.3_54=r41hcfec24a_0
- r-matrix=1.3_4=r41he454529_0
- r-matrixstats=0.61.0=r41hcfec24a_0
- r-memoise=2.0.1=r41hc72bb7e_0
- r-mgcv=1.8_38=r41he454529_0
- r-mime=0.12=r41hcfec24a_0
- r-modelr=0.1.8=r41hc72bb7e_0
- r-munsell=0.5.0=r41hc72bb7e_1003
- r-nlme=3.1_153=r41h859d828_0
- r-openssl=1.4.5=r41he36bf35_1
- r-pbdzmq=0.3_6=r41h42bf92c_0
- r-pillar=1.6.4=r41hc72bb7e_0
- r-pkgconfig=2.0.3=r41hc72bb7e_1
- r-pkgload=1.2.4=r41h03ef668_0
- r-plogr=0.2.0=r41hc72bb7e_1003
- r-plyr=1.8.6=r41h03ef668_1
- r-png=0.1_7=r41hcfec24a_1004
- r-praise=1.0.0=r41hc72bb7e_1004
- r-prettyunits=1.1.1=r41hc72bb7e_1
- r-processx=3.5.2=r41hcfec24a_0
- r-progress=1.2.2=r41hc72bb7e_2
- r-ps=1.6.0=r41hcfec24a_0
- r-purrr=0.3.4=r41hcfec24a_1
- r-r6=2.5.1=r41hc72bb7e_0
- r-rappdirs=0.3.3=r41hcfec24a_0
- r-rcolorbrewer=1.1_2=r41h785f33e_1003
- r-rcpp=1.0.7=r41h03ef668_0
- r-rcpparmadillo=0.10.7.3.0=r41h306847c_0
- r-rcurl=1.98_1.5=r41hcfec24a_0
- r-readr=2.1.1=r41h03ef668_0
- r-readxl=1.3.1=r41h2713e49_4
- r-rematch=1.0.1=r41hc72bb7e_1003
- r-rematch2=2.1.2=r41hc72bb7e_1
- r-repr=1.1.3=r41h785f33e_0
- r-reprex=2.0.1=r41hc72bb7e_0
- r-reshape2=1.4.4=r41h03ef668_1
- r-rlang=0.4.12=r41hcfec24a_0
- r-rmarkdown=2.11=r41hc72bb7e_0
- r-rprojroot=2.0.2=r41hc72bb7e_0
- r-rsqlite=2.2.8=r41h03ef668_0
- r-rstudioapi=0.13=r41hc72bb7e_0
- r-rvest=1.0.2=r41hc72bb7e_0
- r-scales=1.1.1=r41hc72bb7e_0
- r-selectr=0.4_2=r41hc72bb7e_1
- r-snow=0.4_4=r41hc72bb7e_0
- r-stringi=1.7.6=r41h337692f_1
- r-stringr=1.4.0=r41hc72bb7e_2
- r-survival=3.2_13=r41hcfec24a_0
- r-sys=3.4=r41hcfec24a_0
- r-testthat=3.1.1=r41h03ef668_0
- r-tibble=3.1.6=r41hcfec24a_0
- r-tidyr=1.1.4=r41h03ef668_0
- r-tidyselect=1.1.1=r41hc72bb7e_0
- r-tidyverse=1.3.1=r41hc72bb7e_0
- r-tinytex=0.35=r41hc72bb7e_0
- r-tzdb=0.2.0=r41h03ef668_0
- r-utf8=1.2.2=r41hcfec24a_0
- r-uuid=1.0_3=r41hcfec24a_0
- r-vctrs=0.3.8=r41hcfec24a_1
- r-viridislite=0.4.0=r41hc72bb7e_0
- r-vroom=1.5.7=r41h03ef668_0
- r-waldo=0.3.1=r41hc72bb7e_0
- r-withr=2.4.3=r41hc72bb7e_0
- r-xfun=0.28=r41h03ef668_0
- r-xml=3.99_0.8=r41hcfec24a_0
- r-xml2=1.3.3=r41h03ef668_0
- r-xtable=1.8_4=r41hc72bb7e_3
- r-yaml=2.2.1=r41hcfec24a_1
- readline=8.1=h46c0cb4_0
- requests=2.26.0=pyhd8ed1ab_1
- sed=4.8=he412f7d_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=59.4.0=py310hff52083_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.2.0=py310hff52083_2
- sqlite=3.37.0=h9cd32fc_0
- sysroot_linux-64=2.12=he073ed8_15
- terminado=0.12.1=py310hff52083_1
- testpath=0.5.0=pyhd8ed1ab_0
- tk=8.6.11=h27826a3_1
- tktable=2.10=hb7b940f_3
- tornado=6.1=py310h6acc77f_2
- traitlets=5.1.1=pyhd8ed1ab_0
- tzdata=2021e=he74cb21_0
- urllib3=1.26.7=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- websocket-client=1.2.2=pyhd8ed1ab_0
- wheel=0.37.0=pyhd8ed1ab_1
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.6.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.0=ha95c52a_0
prefix: /home/niklas/miniconda3/envs/niche_fibrosis_env_R_DEseq2