- Python3
- Matplotlib
- Make a fasta/fastq index with samtools.
- List the index files:
$ cat fai.fofn
reads.1.fasta.fai Shadowfax
reads.2.fasta.fai Snowmane
reads.3.fasta.fai Bill
python3 podplot.py fai.fofnorpython3 podplot.py -g 1500000000 fai.fofn
$ cat fai.fofn
reads.1.fasta.fai Shadowfax
reads.2.fasta.fai Snowmane
reads.3.fasta.fai Bill
python3 podplot.py fai.fofn or python3 podplot.py -g 1500000000 fai.fofn