DPL-1003 Sample Prep - Create an RNA stock plate from Extraction LIMS

[SujitDey2022]

User story
As a User (Lynda) of the Sample Prep team, I WANT the ability to create RNA Stock Plate in Samples Extraction LIMS AS currently I can only create Stock Plate even if RNA Kit is selected

Refer to slides 3 and13-to-16 for details from the refinement sessions,
https://docs.google.com/presentation/d/1UvMcZhYmTwj2yqSXtp6Tv_d-s8hFX152OGH7_JF4Y7A/edit#slide=id.g292a0708915_0_150

Current limitation in Extraction LIMS:
Using Samples Extractions LIMS =SamplesExtraction 2.2.0 (outside SeqScape) we input the pre-extracted barcode

1. Select correct kit
2. Select instrument or manual
3. Generate the necessary barcode
4. Only stock barcode plate can be created which is DNA even if RNA kit is selected

Who are the primary contacts for this story
Lynda D.

Who is the nominated tester for UAT
Lynda D.

Acceptance criteria

• Confirm whether I can create a RNA tube or plate downstream to export into SeqScape from RNA Kits,
• QiAcube and
• QiaSymphony

Dependencies
This story is blocked by the following dependencies:

• #<issue_no.>
• sanger/#<issue_no.>

References
This story has a non-blocking relationship with:

• [#<issue_no.>
• sanger/#<issue_no.>](DPL-1002 Sample Prep - Ability to create working dilution from RNA stock plate sequencescape#3970)

Additional context

[yoldas]

This is for recording what was done for UAT setup:

• The branch for renaming the RNA Stock Plate to Stock RNA Plate to match the name in Sequence was deployed to UAT.
• A simple step type to create a Stock RNA Plate and transfer it to Sequencescape was created, using the UI
• The step type was added to four activity types for RNA extraction, using the UI

Step Types: Create Stock RNA Plate
https://uat.samples-extraction.psd.sanger.ac.uk/step_types/124

Activity Types: QIAcube DNA & RNA extraction
https://uat.samples-extraction.psd.sanger.ac.uk/activity_types/2

Activity Types: QIAcube RNA Only extraction
https://uat.samples-extraction.psd.sanger.ac.uk/activity_types/4

Activity Types: QIAsymphony based on QIAcube RNA
https://uat.samples-extraction.psd.sanger.ac.uk/activity_types/8

Activity Types: Manual extraction
https://uat.samples-extraction.psd.sanger.ac.uk/activity_types/9

[SujitDey2022]

Need to discuss in light of retirement of Sample Extraction LIMS proposed by PSD