snps-sites tool help

[cmaquez]

I am working on Klebsiella pneumoniae phylogenetic analysis based on the snps sites of the core genome (snp-sites tool).
I would appreciate very much if you could help to localize the correct output files which show the following information:

- the distribution and location of SNPs for each isolate along the core genome 
- the ratio of nonsynonymous-to-synonymous SNPs 

Thank you very much for your help