diff --git a/.envrc b/.envrc new file mode 100644 index 0000000..3550a30 --- /dev/null +++ b/.envrc @@ -0,0 +1 @@ +use flake diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml new file mode 100644 index 0000000..ef4559a --- /dev/null +++ b/.github/workflows/test.yaml @@ -0,0 +1,32 @@ +name: "Test and Build" + +on: [push] + +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - uses: actions/setup-python@v5 + with: + python-version: "3.11" + + - name: "Setup poetry" + uses: abatilo/actions-poetry@v2 + + - name: "Load cached venv" + id: cached-poetry-dependencies + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ hashFiles('**/flake.lock') }}-${{ hashFiles('**/poetry.lock') }} + + - name: "Install python dependencies" + if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: poetry install --no-interaction --no-root + shell: bash + + - name: "Test" + run: 'shopt -s globstar && poetry run python -m unittest tests/**/*.py' + shell: bash diff --git a/.gitignore b/.gitignore index 68bc17f..048e7df 100644 --- a/.gitignore +++ b/.gitignore @@ -157,4 +157,6 @@ cython_debug/ # be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore # and can be added to the global gitignore or merged into this file. For a more nuclear # option (not recommended) you can uncomment the following to ignore the entire idea folder. -#.idea/ +.idea/ + +.direnv/ \ No newline at end of file diff --git a/README.md b/README.md new file mode 100644 index 0000000..9d34f63 --- /dev/null +++ b/README.md @@ -0,0 +1,28 @@ +# PII Detection and Anonymiser + +This is a service that helps you detect and anonymise PII. + +## Prerequisites + +Run `./setup.sh` to install all dependencies. This will install [direnv](https://github.com/direnv/direnv/blob/master/docs/installation.md) and [nix](https://nixos.org/download.html) then simply run `direnv allow` to install all build dependencies. + +Alternatively, make sure you have [python 3.11](https://www.python.org/downloads/) and [poetry](https://python-poetry.org/docs/#installation) setup on your machine. + +## Getting Started + +To get started, run the following: + +``` +poetry install +poetry run python -m unittest tests/**.py +``` + +## Troubleshooting + +There is a chance that `direnv allow` will not load the environment correctly and silently fail. This is observable when you attempt to run `poetry install`, as you will get a `command not found` error in the shell. +To fix this, you need to run the nix commands directly. Run the following: + +``` +nix --extra-experimental-features 'nix-command flakes' develop +``` +This command will create a new Shell instance which has the Nix dependencies loaded. You will need to run commands through this prompt. diff --git a/analyzer_engine/__init__.py b/analyzer_engine/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/analyzer_engine/csv_analyzer_engine.py b/analyzer_engine/csv_analyzer_engine.py new file mode 100644 index 0000000..72df2ae --- /dev/null +++ b/analyzer_engine/csv_analyzer_engine.py @@ -0,0 +1,31 @@ +from presidio_analyzer import AnalyzerEngine +from typing import List, Iterable, Optional + +from presidio_analyzer import BatchAnalyzerEngine, DictAnalyzerResult +import csv + + +class CSVAnalyzerEngine(BatchAnalyzerEngine): + + def __init__(self, nlp_engine): + self.nlp_engine = nlp_engine + analyzer_engine = self.create_analyser_engine() + super().__init__(analyzer_engine) + + def create_analyser_engine(self): + nlp_engine, registry = self.nlp_engine.create_nlp_engine() + analyzer = AnalyzerEngine(nlp_engine=nlp_engine, registry=registry) + return analyzer + + def analyze_csv( + self, + csv_full_path: str, + language: str, + keys_to_skip: Optional[List[str]] = None, + **kwargs, + ) -> Iterable[DictAnalyzerResult]: + with open(csv_full_path, 'r') as csv_file: + csv_list = list(csv.reader(csv_file)) + csv_dict = {header: list(map(str, values)) for header, *values in zip(*csv_list)} + analyzer_results = self.analyze_dict(csv_dict, language, keys_to_skip) + return list(analyzer_results) diff --git a/config/__init__.py b/config/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/config/nlp_engine_config.py b/config/nlp_engine_config.py new file mode 100644 index 0000000..1cdc905 --- /dev/null +++ b/config/nlp_engine_config.py @@ -0,0 +1,37 @@ +from recognizer.flair_recognizer import FlairRecognizer +from presidio_analyzer import RecognizerRegistry +from presidio_analyzer.nlp_engine import NlpEngineProvider +import spacy + + +class NLPEngineConfig: + + def __init__(self, model_path): + self.model_path = model_path + + def create_nlp_engine(self): + pass + + +class FlairNLPEngine(NLPEngineConfig): + def create_nlp_engine(self): + ''' + Flair doesn't have an official NLP Engine. Hence making it as a Recognizer to presidio + :param model_path: + :return: + ''' + registry = RecognizerRegistry() + registry.load_predefined_recognizers() + if not spacy.util.is_package("en_core_web_sm"): + spacy.cli.download("en_core_web_sm") + flair_recognizer = FlairRecognizer(model_path=self.model_path) + nlp_configuration = { + "nlp_engine_name": "spacy", + "models": [{"lang_code": "en", "model_name": "en_core_web_sm"}], + } + registry.add_recognizer(flair_recognizer) + registry.remove_recognizer("SpacyRecognizer") + + nlp_engine = NlpEngineProvider(nlp_configuration=nlp_configuration).create_engine() + + return nlp_engine, registry diff --git a/flake.lock b/flake.lock new file mode 100644 index 0000000..f7d1464 --- /dev/null +++ b/flake.lock @@ -0,0 +1,175 @@ +{ + "nodes": { + "flake-utils": { + "inputs": { + "systems": "systems" + }, + "locked": { + "lastModified": 1710146030, + "narHash": "sha256-SZ5L6eA7HJ/nmkzGG7/ISclqe6oZdOZTNoesiInkXPQ=", + "owner": "numtide", + "repo": "flake-utils", + "rev": "b1d9ab70662946ef0850d488da1c9019f3a9752a", + "type": "github" + }, + "original": { + "owner": "numtide", + "repo": "flake-utils", + "type": "github" + } + }, + "flake-utils_2": { + "inputs": { + "systems": "systems_2" + }, + "locked": { + "lastModified": 1705309234, + "narHash": "sha256-uNRRNRKmJyCRC/8y1RqBkqWBLM034y4qN7EprSdmgyA=", + "owner": "numtide", + "repo": "flake-utils", + "rev": "1ef2e671c3b0c19053962c07dbda38332dcebf26", + "type": "github" + }, + "original": { + "owner": "numtide", + "repo": "flake-utils", + "type": "github" + } + }, + "nix-github-actions": { + "inputs": { + "nixpkgs": [ + "poetry2nix", + "nixpkgs" + ] + }, + "locked": { + "lastModified": 1703863825, + "narHash": "sha256-rXwqjtwiGKJheXB43ybM8NwWB8rO2dSRrEqes0S7F5Y=", + "owner": "nix-community", + "repo": "nix-github-actions", + "rev": "5163432afc817cf8bd1f031418d1869e4c9d5547", + "type": "github" + }, + "original": { + "owner": "nix-community", + "repo": "nix-github-actions", + "type": "github" + } + }, + "nixpkgs": { + "locked": { + "lastModified": 1713714899, + "narHash": "sha256-+z/XjO3QJs5rLE5UOf015gdVauVRQd2vZtsFkaXBq2Y=", + "owner": "NixOS", + "repo": "nixpkgs", + "rev": "6143fc5eeb9c4f00163267708e26191d1e918932", + "type": "github" + }, + "original": { + "owner": "NixOS", + "ref": "nixos-unstable", + "repo": "nixpkgs", + "type": "github" + } + }, + "poetry2nix": { + "inputs": { + "flake-utils": "flake-utils_2", + "nix-github-actions": "nix-github-actions", + "nixpkgs": [ + "nixpkgs" + ], + "systems": "systems_3", + "treefmt-nix": "treefmt-nix" + }, + "locked": { + "lastModified": 1708589824, + "narHash": "sha256-2GOiFTkvs5MtVF65sC78KNVxQSmsxtk0WmV1wJ9V2ck=", + "owner": "nix-community", + "repo": "poetry2nix", + "rev": "3c92540611f42d3fb2d0d084a6c694cd6544b609", + "type": "github" + }, + "original": { + "owner": "nix-community", + "repo": "poetry2nix", + "type": "github" + } + }, + "root": { + "inputs": { + "flake-utils": "flake-utils", + "nixpkgs": "nixpkgs", + "poetry2nix": "poetry2nix" + } + }, + "systems": { + "locked": { + "lastModified": 1681028828, + "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=", + "owner": "nix-systems", + "repo": "default", + "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e", + "type": "github" + }, + "original": { + "owner": "nix-systems", + "repo": "default", + "type": "github" + } + }, + "systems_2": { + "locked": { + "lastModified": 1681028828, + "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=", + "owner": "nix-systems", + "repo": "default", + "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e", + "type": "github" + }, + "original": { + "owner": "nix-systems", + "repo": "default", + "type": "github" + } + }, + "systems_3": { + "locked": { + "lastModified": 1681028828, + "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=", + "owner": "nix-systems", + "repo": "default", + "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e", + "type": "github" + }, + "original": { + "id": "systems", + "type": "indirect" + } + }, + "treefmt-nix": { + "inputs": { + "nixpkgs": [ + "poetry2nix", + "nixpkgs" + ] + }, + "locked": { + "lastModified": 1708335038, + "narHash": "sha256-ETLZNFBVCabo7lJrpjD6cAbnE11eDOjaQnznmg/6hAE=", + "owner": "numtide", + "repo": "treefmt-nix", + "rev": "e504621290a1fd896631ddbc5e9c16f4366c9f65", + "type": "github" + }, + "original": { + "owner": "numtide", + "repo": "treefmt-nix", + "type": "github" + } + } + }, + "root": "root", + "version": 7 +} diff --git a/flake.nix b/flake.nix new file mode 100644 index 0000000..dccecb1 --- /dev/null +++ b/flake.nix @@ -0,0 +1,42 @@ +{ + inputs = { + flake-utils.url = "github:numtide/flake-utils"; + nixpkgs.url = "github:NixOS/nixpkgs/nixos-unstable"; + poetry2nix = { + url = "github:nix-community/poetry2nix"; + inputs.nixpkgs.follows = "nixpkgs"; + }; + }; + + outputs = { self, nixpkgs, flake-utils, poetry2nix }: + flake-utils.lib.eachDefaultSystem (system: + let + nativeBuildInputs = with pkgs; [ stdenv python3 poetry ]; + buildInputs = with pkgs; [ ]; + + # see https://github.com/nix-community/poetry2nix/tree/master#api for more functions and examples. + pkgs = nixpkgs.legacyPackages.${system}; + inherit (poetry2nix.lib.mkPoetry2Nix { inherit pkgs; }) + mkPoetryApplication; + in { + inherit nativeBuildInputs buildInputs; + + packages = { + myapp = mkPoetryApplication { + projectDir = self; + python = pkgs.python3; + }; + default = self.packages.${system}.myapp; + }; + + devShells = { + default = pkgs.mkShell { + packages = nativeBuildInputs ++ buildInputs; + LD_LIBRARY_PATH = if pkgs.stdenv.isLinux then + "${pkgs.stdenv.cc.cc.lib}/lib:/run/opengl-driver/lib:/run/opengl-driver-32/lib" + else + "$LD_LIBRARY_PATH"; + }; + }; + }); +} diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..0238185 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,3453 @@ +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. + 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index 0000000..7455858 --- /dev/null +++ b/poetry.toml @@ -0,0 +1,4 @@ +[virtualenvs] +create = true +in-project = true +path = ".venv" \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..54e78cc --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,20 @@ +[tool.poetry] +name = "pii-detection-and-anonymizer" +version = "0.1.0" +description = "" +authors = ["Akshay Karle <1443108+akshaykarle@users.noreply.github.com>"] +license = "MIT" +readme = "README.md" + +[tool.poetry.dependencies] +python = ">=3.10,<3.12" +flair = "^0.13.1" +spacy = "^3.7.4" +scipy = "<1.13.0" +presidio-anonymizer = "^2.2.354" +presidio-analyzer = {version = "^2.2.354", extras = ["transformers", "stanza"]} + + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/recognizer/__init__.py b/recognizer/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/recognizer/flair_recognizer.py b/recognizer/flair_recognizer.py new file mode 100644 index 0000000..134c568 --- /dev/null +++ b/recognizer/flair_recognizer.py @@ -0,0 +1,170 @@ +''' +Referred from +1. https://github.com/microsoft/presidio/blob/main/docs/samples/python/flair_recognizer.py +2. https://huggingface.co/spaces/presidio/presidio_demo/blob/main/flair_recognizer.py + +''' +from typing import Optional, List, Tuple, Set + +from presidio_analyzer import ( + RecognizerResult, + EntityRecognizer, + AnalysisExplanation, +) +from presidio_analyzer.nlp_engine import NlpArtifacts + +from flair.data import Sentence +from flair.models import SequenceTagger + + +class FlairRecognizer(EntityRecognizer): + ENTITIES = [ + "LOCATION", + "PERSON", + "ORGANIZATION", + + ] + + DEFAULT_EXPLANATION = "Identified as {} by Flair's Named Entity Recognition" + + CHECK_LABEL_GROUPS = [ + ({"LOCATION"}, {"LOC", "LOCATION"}), + ({"PERSON"}, {"PER", "PERSON"}), + ({"ORGANIZATION"}, {"ORG"}), + + ] + + MODEL_LANGUAGES = {"en": "flair/ner-english-large"} + + PRESIDIO_EQUIVALENCES = { + "PER": "PERSON", + "LOC": "LOCATION", + "ORG": "ORGANIZATION", + + } + + def __init__( + self, + supported_language: str = "en", + supported_entities: Optional[List[str]] = None, + check_label_groups: Optional[Tuple[Set, Set]] = None, + model: SequenceTagger = None, + model_path: Optional[str] = None, + ): + self.check_label_groups = ( + check_label_groups if check_label_groups else self.CHECK_LABEL_GROUPS + ) + + supported_entities = supported_entities if supported_entities else self.ENTITIES + + if model and model_path: + raise ValueError("Only one of model or model_path should be provided.") + elif model and not model_path: + self.model = model + elif not model and model_path: + print(f"Loading model from {model_path}") + self.model = SequenceTagger.load(model_path) + else: + print(f"Loading model for language {supported_language}") + self.model = SequenceTagger.load( + self.MODEL_LANGUAGES.get(supported_language) + ) + + super().__init__( + supported_entities=supported_entities, + supported_language=supported_language, + name="Flair Analytics", + ) + + def load(self) -> None: + """Load the model, not used. Model is loaded during initialization.""" + pass + + def get_supported_entities(self) -> List[str]: + """ + Return supported entities by this model. + :return: List of the supported entities. + """ + return self.supported_entities + + # Class to use Flair with Presidio as an external recognizer. + def analyze( + self, text: str, entities: List[str] = None, nlp_artifacts: NlpArtifacts = None + ) -> List[RecognizerResult]: + """ + Analyze text using Text Analytics. + :param text: The text for analysis. + :param entities: Not working properly for this recognizer. + :param nlp_artifacts: Not used by this recognizer. + :param language: Text language. Supported languages in MODEL_LANGUAGES + :return: The list of Presidio RecognizerResult constructed from the recognized + Flair detections. + """ + + results = [] + + sentences = Sentence(text) + self.model.predict(sentences) + + # If there are no specific list of entities, we will look for all of it. + if not entities: + entities = self.supported_entities + + for entity in entities: + if entity not in self.supported_entities: + continue + + for ent in sentences.get_spans("ner"): + if not self.__check_label( + entity, ent.labels[0].value, self.check_label_groups + ): + continue + textual_explanation = self.DEFAULT_EXPLANATION.format( + ent.labels[0].value + ) + explanation = self.build_flair_explanation( + round(ent.score, 2), textual_explanation + ) + flair_result = self._convert_to_recognizer_result(ent, explanation) + + results.append(flair_result) + + return results + + def _convert_to_recognizer_result(self, entity, explanation) -> RecognizerResult: + entity_type = self.PRESIDIO_EQUIVALENCES.get(entity.tag, entity.tag) + flair_score = round(entity.score, 2) + + flair_results = RecognizerResult( + entity_type=entity_type, + start=entity.start_position, + end=entity.end_position, + score=flair_score, + analysis_explanation=explanation, + ) + + return flair_results + + def build_flair_explanation( + self, original_score: float, explanation: str + ) -> AnalysisExplanation: + """ + Create explanation for why this result was detected. + :param original_score: Score given by this recognizer + :param explanation: Explanation string + :return: + """ + explanation = AnalysisExplanation( + recognizer=self.__class__.__name__, + original_score=original_score, + textual_explanation=explanation, + ) + return explanation + + @staticmethod + def __check_label( + entity: str, label: str, check_label_groups: Tuple[Set, Set] + ) -> bool: + return any( + [entity in egrp and label in lgrp for egrp, lgrp in check_label_groups] + ) diff --git a/sample_data.csv b/sample_data.csv new file mode 100644 index 0000000..713bac3 --- /dev/null +++ b/sample_data.csv @@ -0,0 +1,4 @@ +id,name,city,comments +1,Sowmya,New York,called him yesterday to confirm he requested to call back in 2 days +2,Jill,Los Angeles,accepted the offer license number AC432223 +3,Jack,Chicago,need to call him at phone number 212-555-5555 \ No newline at end of file diff --git a/setup.sh b/setup.sh new file mode 100755 index 0000000..6cad5d3 --- /dev/null +++ b/setup.sh @@ -0,0 +1,21 @@ +#!/usr/bin/env bash +set -e + +# setup nix +if command -v nix >/dev/null; then + echo "nix is already installed on this system." +else + echo "Installing nix package manager" + curl -L https://nixos.org/nix/install | sh + source ~/.nix-profile/etc/profile.d/nix.sh +fi + +# setup direnv +if command -v direnv >/dev/null; then + echo "direnv is already installed on this system." +else + echo "Installing direnv" + nix-env -f '' -iA direnv nix-direnv +fi + +direnv allow diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/analyzer_engine/__init__.py b/tests/analyzer_engine/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/analyzer_engine/csv_analyzer_engine_test.py b/tests/analyzer_engine/csv_analyzer_engine_test.py new file mode 100644 index 0000000..84db309 --- /dev/null +++ b/tests/analyzer_engine/csv_analyzer_engine_test.py @@ -0,0 +1,22 @@ +import unittest + +from analyzer_engine.csv_analyzer_engine import CSVAnalyzerEngine +from config.nlp_engine_config import FlairNLPEngine + + +class CSVAnalayzerEngineTest(unittest.TestCase): + def setUp(self) -> None: + nlp_engine = FlairNLPEngine("flair/ner-english-large") + self.csv_analyser = CSVAnalyzerEngine(nlp_engine) + + def test_csv_analyzer_engine_anonymizer(self): + import pprint + from presidio_anonymizer import BatchAnonymizerEngine + analyzer_results = self.csv_analyser.analyze_csv('./sample_data.csv', language="en") + + pprint.pprint(analyzer_results) + + anonymizer = BatchAnonymizerEngine() + anonymized_results = anonymizer.anonymize_dict(analyzer_results) + pprint.pprint(anonymized_results) + self.assertIsNotNone(anonymized_results) \ No newline at end of file diff --git a/tests/analyzer_engine/sample_data.csv b/tests/analyzer_engine/sample_data.csv new file mode 100644 index 0000000..713bac3 --- /dev/null +++ b/tests/analyzer_engine/sample_data.csv @@ -0,0 +1,4 @@ +id,name,city,comments +1,Sowmya,New York,called him yesterday to confirm he requested to call back in 2 days +2,Jill,Los Angeles,accepted the offer license number AC432223 +3,Jack,Chicago,need to call him at phone number 212-555-5555 \ No newline at end of file diff --git a/tests/recognizer/__init__.py b/tests/recognizer/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/recognizer/flair_recognizer_test.py b/tests/recognizer/flair_recognizer_test.py new file mode 100644 index 0000000..032b668 --- /dev/null +++ b/tests/recognizer/flair_recognizer_test.py @@ -0,0 +1,20 @@ +import unittest + +from recognizer.flair_recognizer import FlairRecognizer + + +class TestFlairRecognizer(unittest.TestCase): + def setUp(self) -> None: + self.recognizer = FlairRecognizer(model_path="flair/ner-english-large") + + def test_flair_recognizer_analyse(self): + test_data = "Sowmya is working in Berkley bank as an accountant since 2021" + result = self.recognizer.analyze(test_data) + self.assertGreater(len(result), 0) + + def test_flair_recognizes_persons_correctly(self): + test_data = "Sowmya is a person name" + self.assertGreater(len(self.recognizer.analyze(test_data)), 0) + test_data = "XXXXXX is a valid name?" + self.assertEquals(len(self.recognizer.analyze(test_data)), 0) +