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[[package]] name = "typing-extensions" -version = "4.11.0" +version = "4.12.0" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" files = [ - {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"}, - {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"}, + {file = "typing_extensions-4.12.0-py3-none-any.whl", hash = "sha256:b349c66bea9016ac22978d800cfff206d5f9816951f12a7d0ec5578b0a819594"}, + {file = "typing_extensions-4.12.0.tar.gz", hash = "sha256:8cbcdc8606ebcb0d95453ad7dc5065e6237b6aa230a31e81d0f440c30fed5fd8"}, ] [[package]] @@ -3427,6 +3612,23 @@ srsly = ">=2.4.3,<3.0.0" typer = ">=0.3.0,<0.10.0" wasabi = ">=0.9.1,<1.2.0" +[[package]] +name = "werkzeug" +version = "3.0.3" +description = "The comprehensive WSGI web application library." +optional = false +python-versions = ">=3.8" +files = [ + {file = "werkzeug-3.0.3-py3-none-any.whl", hash = "sha256:fc9645dc43e03e4d630d23143a04a7f947a9a3b5727cd535fdfe155a17cc48c8"}, + {file = "werkzeug-3.0.3.tar.gz", hash = "sha256:097e5bfda9f0aba8da6b8545146def481d06aa7d3266e7448e2cccf67dd8bd18"}, +] + +[package.dependencies] +MarkupSafe = ">=2.1.1" + +[package.extras] +watchdog = ["watchdog (>=2.3)"] + [[package]] name = "wikipedia-api" version = "0.6.0" @@ -3523,4 +3725,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = ">=3.10,<3.12" -content-hash = "3a9d4de2fa2f4472d0e59b8e541562a39b95611cd70172c3bda32413f5fdbbe1" +content-hash = "53ff14261288a7952ee159b508aaed77043842fe347818bec4313fdd5f3e2117" diff --git a/pyproject.toml b/pyproject.toml index ff611de..afd1975 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,6 +14,7 @@ scipy = "<1.13.0" presidio-anonymizer = "^2.2.354" presidio-analyzer = {version = "^2.2.354", extras = ["transformers", "stanza"]} pytest = "^8.2.1" +flask = "^3.0.3" [build-system] diff --git a/src/app.py b/src/app.py new file mode 100644 index 0000000..9e41ce6 --- /dev/null +++ b/src/app.py @@ -0,0 +1,127 @@ +import json +import logging +import os +import uuid +from typing import Tuple + +from flask import Flask, request, jsonify, Response, send_file + +import csv +from analyzer_engine.csv_analyzer_engine import CSVAnalyzerEngine +from presidio_analyzer import DictAnalyzerResult, RecognizerResult +from presidio_anonymizer import BatchAnonymizerEngine +from config.nlp_engine_config import FlairNLPEngine + +DEFAULT_PORT = "3000" +NLP_ENGINE = "flair/ner-english-large" +UPLOAD_DIR = "file_uploads" + +class Server: + """HTTP Server for calling Presidio Analyzer.""" + + def __init__(self): + self.logger = logging.getLogger("pii-detection-anonymizer") + self.logger.setLevel(os.environ.get("LOG_LEVEL", self.logger.level)) + self.app = Flask(__name__) + self.logger.info("Starting analyzer engine") + nlp_engine = FlairNLPEngine(NLP_ENGINE) + self.engine = CSVAnalyzerEngine(nlp_engine) + self.logger.info("Started analyzer engine") + if not os.path.exists(UPLOAD_DIR): + os.makedirs(UPLOAD_DIR) + + @self.app.route("/health") + def health() -> str: + """Return basic health probe result.""" + return "PII detection and anonymizer service is up" + + @self.app.route("/analyze", methods=["POST"]) + def analyze() -> Tuple[str, int]: + """Execute the analyzer function.""" + try: + file = request.files['file'] + language = request.form['language'] + if file.filename == '': + return jsonify({'error': 'No selected file'}), 400 + + filepath = f'{UPLOAD_DIR}/{uuid.uuid4()}' + file.save(filepath) + self.logger.info(f"Successfully saved file: {filepath}") + + analyzer_results = self.engine.analyze_csv( + csv_full_path=filepath, + language=language + ) + self.logger.debug(f"Analyzed file with results: {analyzer_results}") + os.remove(filepath) + self.logger.info(f"Successfully removed file: {filepath}") + + analyzer_results_list = {} + for a in analyzer_results: + recognizer_results = [] + for r in a.recognizer_results: + recognizer_results.append([o.to_dict() for o in r]) + analyzer_results_list[a.key] = { + "value": a.value, + "recognizer_results": recognizer_results + } + + return jsonify(analyzer_results_list), 200 + except Exception as e: + self.logger.error( + f"A fatal error occurred during execution of " + f"AnalyzerEngine.analyze(). {e}" + ) + return jsonify(error=e.args[0]), 500 + + @self.app.route("/anonymize", methods=["POST"]) + def anonymize() -> Response: + """Execute the anonymizer function.""" + try: + analyzer_results = json.loads(request.form['analyzer_results']) + dict_analyzer_results = [] + for key, value in analyzer_results.items(): + recognizer_results = [] + for results_for_each_entry in value["recognizer_results"]: + each_entry_recognizer_results = [] + for r in results_for_each_entry: + each_entry_recognizer_results.append( + RecognizerResult(r["entity_type"], + r["start"], + r["end"], + r["score"])) + recognizer_results.append(each_entry_recognizer_results) + dict_analyzer_results.append(DictAnalyzerResult(key=key, value=value["value"], recognizer_results=recognizer_results)) + + anonymizer = BatchAnonymizerEngine() + anonymized_results = anonymizer.anonymize_dict(dict_analyzer_results) + + data = [] + keys = anonymized_results.keys() + for i in range(len(anonymized_results[list(keys)[0]])): + row = {key: anonymized_results[key][i] for key in keys} + data.append(row) + + filename = f'{UPLOAD_DIR}/{uuid.uuid4()}.csv' + with open(filename, 'w', newline='') as output: + writer = csv.DictWriter(output, fieldnames=keys) + writer.writeheader() + writer.writerows(data) + + return send_file( + os.path.abspath(filename), + mimetype='text/csv', + as_attachment=True, + download_name='anonymized_data.csv' + ) + except Exception as e: + self.logger.error( + f"A fatal error occurred during execution of " + f"AnonymizerEngine.anonymize(). {e}" + ) + return jsonify(error=e.args[0]), 500 + +if __name__ == "__main__": + port = int(os.environ.get("PORT", DEFAULT_PORT)) + server = Server() + server.app.run(host="0.0.0.0", port=port) diff --git a/tests/analyzer_engine/csv_analyzer_engine_test.py b/tests/analyzer_engine/csv_analyzer_engine_test.py index e45ef83..3b8fdf5 100644 --- a/tests/analyzer_engine/csv_analyzer_engine_test.py +++ b/tests/analyzer_engine/csv_analyzer_engine_test.py @@ -8,7 +8,7 @@ def test_csv_analyzer_engine_anonymizer(): nlp_engine = FlairNLPEngine("flair/ner-english-large") csv_analyzer = CSVAnalyzerEngine(nlp_engine) from presidio_anonymizer import BatchAnonymizerEngine - analyzer_results = csv_analyzer.analyze_csv('./sample_data.csv', language="en") + analyzer_results = csv_analyzer.analyze_csv('./tests/sample_data/sample_data.csv', language="en") anonymizer = BatchAnonymizerEngine() anonymized_results = anonymizer.anonymize_dict(analyzer_results) diff --git a/tests/app_test.py b/tests/app_test.py new file mode 100644 index 0000000..095e542 --- /dev/null +++ b/tests/app_test.py @@ -0,0 +1,76 @@ +import pytest +import json + +from app import Server + +@pytest.fixture() +def app(): + app = Server().app + app.config.update({ + "TESTING": True, + }) + + yield app + + +@pytest.fixture() +def client(app): + return app.test_client() + + +def test_health(client): + response = client.get("/health") + assert response.status_code == 200 + +def test_analyze_non_existent(client): + response = client.post("/analyze", data={ + "language": "en", + }) + + assert response.status_code == 500 + + +def test_analyze_invalid_csv(client): + response = client.post("/analyze", data={ + "file": open('./tests/sample_data/invalid.csv', 'rb'), + }) + + assert response.status_code == 500 + + +def test_analyze_pii_csv(client): + expected_response_id = {'value': ['1', '2', '3'], 'recognizer_results': [[], [], []]} + + response = client.post("/analyze", data={ + "file": open('./tests/sample_data/sample_data.csv', 'rb'), + "language": "en", + }) + + assert response.status_code == 200 + data = json.loads(response.get_data(as_text=True)) + # No PII in id + assert data['id'] == expected_response_id + # first row has no PII + assert data['comments']['recognizer_results'][0] == [] + # second row has PII + assert data['comments']['recognizer_results'][1][0]['entity_type'] == 'US_DRIVER_LICENSE' + assert data['comments']['recognizer_results'][1][0]['start'] == 34 + assert data['comments']['recognizer_results'][1][0]['end'] == 42 + +def test_anonymize_csv_pii(client): + analyze_response = client.post("/analyze", data={ + "file": open('./tests/sample_data/sample_data.csv', 'rb'), + "language": "en", + }) + + assert analyze_response.status_code == 200 + analyzer_results = analyze_response.get_data(as_text=True) + + anonymizer_response = client.post("/anonymize", data={ + "file": open('./tests/sample_data/sample_data.csv', 'rb'), + "analyzer_results": analyzer_results + }) + + assert anonymizer_response.status_code == 200 + anonymizer_data = anonymizer_response.get_data(as_text=True) + assert anonymizer_data diff --git a/tests/sample_data/invalid.csv b/tests/sample_data/invalid.csv new file mode 100644 index 0000000..51e7b04 --- /dev/null +++ b/tests/sample_data/invalid.csv @@ -0,0 +1,3 @@ +{ + "hello": "json" +} diff --git a/tests/analyzer_engine/sample_data.csv b/tests/sample_data/sample_data.csv similarity index 100% rename from tests/analyzer_engine/sample_data.csv rename to tests/sample_data/sample_data.csv