From 69c269e587e975c25611f354c4ef45a0b8b2bf73 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 09:13:03 +0200 Subject: [PATCH 01/12] updated sysreqs.json --- test/sysreqs.json | 1002 ++++++++++++++++++++++++++------------------- 1 file changed, 579 insertions(+), 423 deletions(-) diff --git a/test/sysreqs.json b/test/sysreqs.json index 766fd77..188f02d 100644 --- a/test/sysreqs.json +++ b/test/sysreqs.json @@ -1,9 +1,20 @@ + [ { "Package": "ABC.RAP", "Version": "0.9.0", "SystemRequirements": "GNU make" }, + { + "Package": "abn", + "Version": "3.1.1", + "SystemRequirements": "Gnu Scientific Library version >= 1.12" + }, + { + "Package": "accessr", + "Version": "1.0.1", + "SystemRequirements": "OfficeToPDF - https://github.com/cognidox/OfficeToPDF, pandoc (>= 1.14) - https://pandoc.org" + }, { "Package": "acro", "Version": "0.1.1", @@ -14,19 +25,29 @@ "Version": "1.1", "SystemRequirements": "C++11" }, + { + "Package": "adass", + "Version": "1.0.1", + "SystemRequirements": "GNU make" + }, { "Package": "adbcpostgresql", - "Version": "0.11.0", + "Version": "0.13.0", "SystemRequirements": "libpq" }, { "Package": "adbcsqlite", - "Version": "0.10.0", + "Version": "0.13.0", "SystemRequirements": "SQLite3" }, + { + "Package": "adelie", + "Version": "1.0.1", + "SystemRequirements": "C++17" + }, { "Package": "adimpro", - "Version": "0.9.6", + "Version": "0.9.7", "SystemRequirements": "Image Magick (for reading non PPM format), dcraw (for reading RAW images)." }, { @@ -54,6 +75,11 @@ "Version": "0.1.2", "SystemRequirements": "C++11" }, + { + "Package": "alcyon", + "Version": "0.3.0", + "SystemRequirements": "C++17" + }, { "Package": "alfr", "Version": "1.2.1", @@ -91,7 +117,7 @@ }, { "Package": "anticlust", - "Version": "0.8.1", + "Version": "0.8.5", "SystemRequirements": "The exact (anti)clustering algorithms require that either the GNU linear programming kit (GLPK library) is installed () or the SYMPHONY open source MILP solver (). Rendering the vignette requires pandoc ()." }, { @@ -101,13 +127,13 @@ }, { "Package": "apache.sedona", - "Version": "1.5.1", + "Version": "1.6.0", "SystemRequirements": "'Apache Spark' 3.x" }, { "Package": "apcf", - "Version": "0.3.0", - "SystemRequirements": "C++11, GEOS (>= 3.4.0)" + "Version": "0.3.1", + "SystemRequirements": "GEOS (>= 3.4.0)" }, { "Package": "aphid", @@ -119,14 +145,34 @@ "Version": "1.0.1", "SystemRequirements": "C++17, gmp, mpfr" }, + { + "Package": "arcgis", + "Version": "0.1.1", + "SystemRequirements": "Cargo (Rust's package manager), rustc" + }, + { + "Package": "arcgisgeocode", + "Version": "0.2.0", + "SystemRequirements": "Cargo (Rust's package manager), rustc" + }, + { + "Package": "arcgisplaces", + "Version": "0.1.0", + "SystemRequirements": "Cargo (Rust's package manager), rustc, OpenSSL" + }, + { + "Package": "arcgisutils", + "Version": "0.3.0", + "SystemRequirements": "Cargo (Rust's package manager), rustc" + }, { "Package": "archive", - "Version": "1.1.7", + "Version": "1.1.8", "SystemRequirements": "libarchive: libarchive-dev (deb), libarchive-devel (rpm), libarchive (homebrew), libarchive_dev (csw)" }, { "Package": "arcpbf", - "Version": "0.1.0", + "Version": "0.1.3", "SystemRequirements": "Cargo (Rust's package manager), rustc" }, { @@ -156,12 +202,12 @@ }, { "Package": "arrow", - "Version": "15.0.1", + "Version": "16.1.0", "SystemRequirements": "C++17; for AWS S3 support on Linux, libcurl and openssl (optional); cmake >= 3.16 (build-time only, and only for full source build)" }, { "Package": "arulesCBA", - "Version": "1.2.5", + "Version": "1.2.7", "SystemRequirements": "Java (>= 8)" }, { @@ -176,7 +222,7 @@ }, { "Package": "asremlPlus", - "Version": "4.4.32", + "Version": "4.4.35", "SystemRequirements": "asreml" }, { @@ -184,16 +230,16 @@ "Version": "1.4.3", "SystemRequirements": "C++11, GNU make" }, - { - "Package": "autocart", - "Version": "1.4.5", - "SystemRequirements": "GNU make" - }, { "Package": "autoharp", "Version": "0.0.10", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org" }, + { + "Package": "autonewsmd", + "Version": "0.0.8", + "SystemRequirements": "Quarto command line tools (https://github.com/quarto-dev/quarto-cli)." + }, { "Package": "av", "Version": "0.9.0", @@ -206,7 +252,7 @@ }, { "Package": "b64", - "Version": "0.1.0", + "Version": "0.1.1", "SystemRequirements": "Cargo (Rust's package manager), rustc" }, { @@ -214,6 +260,11 @@ "Version": "1.2.0", "SystemRequirements": "Docker and/or Singularity (>=3.0)" }, + { + "Package": "babette", + "Version": "2.3.4", + "SystemRequirements": "BEAST2 (https://www.beast2.org/)" + }, { "Package": "bacistool", "Version": "1.0.0", @@ -241,13 +292,13 @@ }, { "Package": "bamdit", - "Version": "3.4.0", + "Version": "3.4.1", "SystemRequirements": "JAGS (>= 4.3.0) (see http://mcmc-jags.sourceforge.net)" }, { "Package": "bamm", - "Version": "0.4.3", - "SystemRequirements": "C++11, GDAL (>= 2.2.3): gdal-bin (deb), libgdal-dev (deb) or gdal-devel (rmp), GEOS (>= 3.4.0), PROJ (>= 4.9.3): libproj-dev (deb), sqlite3, ImageMagick++: imagemagick (deb), libmagic-dev (deb), libmagick++-dev (deb) or ImageMagick-c++-devel (rpm) ImageMagick (http://imagemagick.org) or GraphicsMagick (http://www.graphicsmagick.org) or LyX (http://www.lyx.org) for saveGIF(); (PDF)LaTeX for saveLatex(); SWF Tools (http://swftools.org) for saveSWF(); FFmpeg (http://ffmpeg.org) or avconv (https://libav.org/avconv.html) for saveVideo()" + "Version": "0.5.0", + "SystemRequirements": "GDAL (>= 2.2.3): gdal-bin (deb), libgdal-dev (deb) or gdal-devel (rmp), GEOS (>= 3.4.0), PROJ (>= 4.9.3): libproj-dev (deb), sqlite3, ImageMagick++: imagemagick (deb), libmagic-dev (deb), libmagick++-dev (deb) or ImageMagick-c++-devel (rpm) ImageMagick (http://imagemagick.org) or GraphicsMagick (http://www.graphicsmagick.org) or LyX (http://www.lyx.org) for saveGIF(); (PDF)LaTeX for saveLatex(); SWF Tools (http://swftools.org) for saveSWF(); FFmpeg (http://ffmpeg.org) or avconv (https://libav.org/avconv.html) for saveVideo()" }, { "Package": "banditpam", @@ -271,7 +322,7 @@ }, { "Package": "batchmix", - "Version": "2.1.0", + "Version": "2.2.1", "SystemRequirements": "GNU make" }, { @@ -301,7 +352,7 @@ }, { "Package": "BayesFM", - "Version": "0.1.5", + "Version": "0.1.7", "SystemRequirements": "gfortran (>= 4.6.3)" }, { @@ -356,7 +407,7 @@ }, { "Package": "BayesSUR", - "Version": "2.1-6", + "Version": "2.2-1", "SystemRequirements": "C++17" }, { @@ -379,6 +430,11 @@ "Version": "0.0.5", "SystemRequirements": "GNU make" }, + { + "Package": "BayLum", + "Version": "0.3.2", + "SystemRequirements": "JAGS >= 4.3.2 (https://mcmc-jags.sourceforge.io/)" + }, { "Package": "bbmix", "Version": "1.0.0", @@ -401,7 +457,7 @@ }, { "Package": "bcputility", - "Version": "0.4.0", + "Version": "0.4.3", "SystemRequirements": "bcp Utility" }, { @@ -421,7 +477,7 @@ }, { "Package": "beastier", - "Version": "2.5", + "Version": "2.5.1", "SystemRequirements": "BEAST2 (https://www.beast2.org/)" }, { @@ -446,7 +502,7 @@ }, { "Package": "bellreg", - "Version": "0.0.2", + "Version": "0.0.2.1", "SystemRequirements": "GNU make" }, { @@ -486,7 +542,7 @@ }, { "Package": "BGVAR", - "Version": "2.5.5", + "Version": "2.5.7", "SystemRequirements": "GNU make" }, { @@ -501,7 +557,7 @@ }, { "Package": "biblio", - "Version": "0.0.8", + "Version": "0.0.10", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org" }, { @@ -544,6 +600,11 @@ "Version": "0.2.8", "SystemRequirements": "C++11, fftw3, GNU make" }, + { + "Package": "BioCro", + "Version": "3.1.3", + "SystemRequirements": "C++11, GNU make" + }, { "Package": "bioimagetools", "Version": "1.1.8", @@ -559,6 +620,11 @@ "Version": "0.0-7", "SystemRequirements": "windows" }, + { + "Package": "birdie", + "Version": "0.6.1", + "SystemRequirements": "GNU make, C++17" + }, { "Package": "bisque", "Version": "1.0.2", @@ -569,6 +635,11 @@ "Version": "1.1.2", "SystemRequirements": "GNU make" }, + { + "Package": "bittermelon", + "Version": "2.0.2", + "SystemRequirements": "'monobit' for reading/writing additional bitmap font formats." + }, { "Package": "BivRec", "Version": "1.2.1", @@ -576,7 +647,7 @@ }, { "Package": "blandr", - "Version": "0.5.1", + "Version": "0.6.0", "SystemRequirements": "pandoc (>=1.12.3)" }, { @@ -591,7 +662,7 @@ }, { "Package": "blavaan", - "Version": "0.5-3", + "Version": "0.5-5", "SystemRequirements": "GNU make" }, { @@ -631,7 +702,7 @@ }, { "Package": "bnlearn", - "Version": "4.9.3", + "Version": "4.9.4", "SystemRequirements": "USE_C17" }, { @@ -641,7 +712,7 @@ }, { "Package": "bookdown", - "Version": "0.38", + "Version": "0.40", "SystemRequirements": "Pandoc (>= 1.17.2)" }, { @@ -651,7 +722,7 @@ }, { "Package": "bootUR", - "Version": "1.0.3", + "Version": "1.0.4", "SystemRequirements": "GNU make" }, { @@ -671,8 +742,8 @@ }, { "Package": "BPrinStratTTE", - "Version": "0.0.2", - "SystemRequirements": "GNU make, C++17" + "Version": "0.0.7", + "SystemRequirements": "GNU make" }, { "Package": "BrailleR", @@ -729,9 +800,14 @@ "Version": "1.1.0", "SystemRequirements": "Platform LSF, bsub" }, + { + "Package": "bsynth", + "Version": "1.0", + "SystemRequirements": "GNU make" + }, { "Package": "BTSPAS", - "Version": "2024.4.1", + "Version": "2024.5.9", "SystemRequirements": "JAGS" }, { @@ -759,11 +835,6 @@ "Version": "2.1.1", "SystemRequirements": "Python (>= 3.6.0)" }, - { - "Package": "CARlasso", - "Version": "0.1.2", - "SystemRequirements": "C++11" - }, { "Package": "CARME", "Version": "0.1.1", @@ -791,12 +862,12 @@ }, { "Package": "causact", - "Version": "0.5.4", + "Version": "0.5.5", "SystemRequirements": "Python and numpyro are needed for Bayesian inference computations; python (>= 3.8) with header files and shared library; numpyro (= v0.12.1; https://https://num.pyro.ai/en/latest/index.html); arviz (= v0.15.1; https://https://python.arviz.org/en/stable/)" }, { "Package": "CausalQueries", - "Version": "1.1.0", + "Version": "1.1.1", "SystemRequirements": "GNU make" }, { @@ -829,15 +900,20 @@ "Version": "0.2.0", "SystemRequirements": "Google Chrome or other Chromium-based browser. chromium: chromium (rpm) or chromium-browser (deb)" }, + { + "Package": "CirceR", + "Version": "1.3.3", + "SystemRequirements": "Java (>= 8)" + }, { "Package": "cit", - "Version": "2.3.1", + "Version": "2.3.2", "SystemRequirements": "gsl (with development libraries libgsl-dev)" }, { "Package": "clarabel", - "Version": "0.5.1", - "SystemRequirements": "Cargo (rustc package manager) and GNU make" + "Version": "0.9.0", + "SystemRequirements": "Cargo (Rust package manager), rustc and GNU Make" }, { "Package": "cld3", @@ -846,7 +922,7 @@ }, { "Package": "cleanNLP", - "Version": "3.0.7", + "Version": "3.1.0", "SystemRequirements": "Python (>= 3.7.0)" }, { @@ -856,12 +932,12 @@ }, { "Package": "clinDataReview", - "Version": "1.5.0", + "Version": "1.6.1", "SystemRequirements": "pandoc (to create a clinical data review report)" }, { "Package": "clinUtils", - "Version": "0.1.4", + "Version": "0.2.0", "SystemRequirements": "pandoc (for export clin DT to a file - inclusion of list of interactive plots/objects with knitr)" }, { @@ -881,7 +957,7 @@ }, { "Package": "clubpro", - "Version": "0.6.0", + "Version": "0.6.2", "SystemRequirements": "C++17" }, { @@ -891,7 +967,7 @@ }, { "Package": "ClusterR", - "Version": "1.3.2", + "Version": "1.3.3", "SystemRequirements": "libarmadillo: apt-get install -y libarmadillo-dev (deb), libblas: apt-get install -y libblas-dev (deb), liblapack: apt-get install -y liblapack-dev (deb), libarpack++2: apt-get install -y libarpack++2-dev (deb), gfortran: apt-get install -y gfortran (deb), libgmp3: apt-get install -y libgmp3-dev (deb), libfftw3: apt-get install -y libfftw3-dev (deb), libtiff5: apt-get install -y libtiff5-dev (deb)" }, { @@ -899,6 +975,11 @@ "Version": "0.1.3", "SystemRequirements": "MOSEK (http://www.mosek.com) and MOSEK License for use of Rmosek" }, + { + "Package": "cmstatrExt", + "Version": "0.4.0", + "SystemRequirements": "C++17" + }, { "Package": "cncaGUI", "Version": "1.1", @@ -941,7 +1022,7 @@ }, { "Package": "Colossus", - "Version": "1.1.0", + "Version": "1.1.1", "SystemRequirements": "make" }, { @@ -949,6 +1030,11 @@ "Version": "0.3.9", "SystemRequirements": "C++17" }, + { + "Package": "COMBO", + "Version": "1.1.0", + "SystemRequirements": "JAGS (http://mcmc-jags.sourceforge.net)" + }, { "Package": "CommonJavaJars", "Version": "1.1-0", @@ -991,8 +1077,8 @@ }, { "Package": "conquestr", - "Version": "1.3.0", - "SystemRequirements": "ACER ConQuest (>=5.34.3)" + "Version": "1.3.4", + "SystemRequirements": "ACER ConQuest (>=5.40.0)" }, { "Package": "conStruct", @@ -1061,7 +1147,7 @@ }, { "Package": "crandep", - "Version": "0.3.7", + "Version": "0.3.9", "SystemRequirements": "pandoc (>= 1.12.3) - http://pandoc.org" }, { @@ -1086,12 +1172,12 @@ }, { "Package": "ctsem", - "Version": "3.9.1", + "Version": "3.10.0", "SystemRequirements": "GNU make" }, { "Package": "cubature", - "Version": "2.1.0", + "Version": "2.1.1", "SystemRequirements": "GNU make and USE_C17" }, { @@ -1114,6 +1200,11 @@ "Version": "0.4.1", "SystemRequirements": "C++11" }, + { + "Package": "CWT", + "Version": "0.2.1", + "SystemRequirements": "GNU make" + }, { "Package": "cycleRtools", "Version": "1.1.1", @@ -1146,7 +1237,7 @@ }, { "Package": "DatabionicSwarm", - "Version": "1.2.1", + "Version": "2.0.0", "SystemRequirements": "GNU make, pandoc (>=1.12.3, needed for vignettes)" }, { @@ -1159,6 +1250,11 @@ "Version": "1.4.1", "SystemRequirements": "pandoc (>= 2.0; https://pandoc.org), git, whoami" }, + { + "Package": "DataPackageR", + "Version": "0.16.0", + "SystemRequirements": "pandoc - https://pandoc.org" + }, { "Package": "dataReporter", "Version": "1.0.2", @@ -1226,8 +1322,8 @@ }, { "Package": "Delaporte", - "Version": "8.4.0", - "SystemRequirements": "A version of Fortran supporting the LOG_GAMMA Intrinsic" + "Version": "8.4.1", + "SystemRequirements": "A version of Fortran supporting the LOG_GAMMA Intrinsic and the ieee_arithmetic module." }, { "Package": "densEstBayes", @@ -1286,7 +1382,7 @@ }, { "Package": "dialrjars", - "Version": "8.13.25", + "Version": "8.13.36", "SystemRequirements": "java (>= 1.6)" }, { @@ -1350,8 +1446,8 @@ "SystemRequirements": "libpq >= 9.0: libpq-dev (deb) or postgresql-devel (rpm)" }, { - "Package": "dnapath", - "Version": "0.7.4", + "Package": "dlmtree", + "Version": "1.0.0", "SystemRequirements": "C++11" }, { @@ -1376,7 +1472,7 @@ }, { "Package": "dodgr", - "Version": "0.2.21", + "Version": "0.4.1", "SystemRequirements": "GNU make" }, { @@ -1385,9 +1481,9 @@ "SystemRequirements": "domino (~>1.7.1)" }, { - "Package": "dosearch", - "Version": "1.0.8", - "SystemRequirements": "C++11" + "Package": "DQAstats", + "Version": "0.3.5", + "SystemRequirements": "Quarto command line tools (https://github.com/quarto-dev/quarto-cli)." }, { "Package": "drf", @@ -1411,7 +1507,7 @@ }, { "Package": "dtwclust", - "Version": "5.5.12", + "Version": "6.0.0", "SystemRequirements": "GNU make" }, { @@ -1446,7 +1542,7 @@ }, { "Package": "earthtide", - "Version": "0.1.2", + "Version": "0.1.5", "SystemRequirements": "C++17" }, { @@ -1456,12 +1552,12 @@ }, { "Package": "EBASE", - "Version": "1.0.1", + "Version": "1.0.2", "SystemRequirements": "JAGS 4.x.y (https://mcmc-jags.sourceforge.net)" }, { "Package": "ebvcube", - "Version": "0.1.7", + "Version": "0.2.3", "SystemRequirements": "GDAL binaries" }, { @@ -1509,6 +1605,11 @@ "Version": "0.1.2", "SystemRequirements": "The package required the jq command line library. Please check https://stedolan.github.io/jq/download/ for download instructions." }, + { + "Package": "EigenR", + "Version": "1.3.0", + "SystemRequirements": "C++ 17" + }, { "Package": "elections.dtree", "Version": "2.0.0", @@ -1541,7 +1642,7 @@ }, { "Package": "emayili", - "Version": "0.7.18", + "Version": "0.9.1", "SystemRequirements": "The function render() requires Pandoc (http://pandoc.org). To use PGP/GnuPG encryption requires gpg." }, { @@ -1556,7 +1657,7 @@ }, { "Package": "EpiNow2", - "Version": "1.4.0", + "Version": "1.5.2", "SystemRequirements": "GNU make C++17" }, { @@ -1599,6 +1700,11 @@ "Version": "0.1.6", "SystemRequirements": "EViews (>= 8)" }, + { + "Package": "EWOC.Comb", + "Version": "1.0", + "SystemRequirements": "JAGS (>= 4.0.0). For installation instructions, see http://mcmc-jags.sourceforge.net/" + }, { "Package": "exactextractr", "Version": "0.10.0", @@ -1606,7 +1712,7 @@ }, { "Package": "exams", - "Version": "2.4-0", + "Version": "2.4-1", "SystemRequirements": "pandoc (>= 2.0)" }, { @@ -1626,14 +1732,9 @@ }, { "Package": "exiftoolr", - "Version": "0.2.4", + "Version": "0.2.6", "SystemRequirements": "Perl" }, - { - "Package": "expertsurv", - "Version": "1.3.0", - "SystemRequirements": "GNU make, C++17" - }, { "Package": "extraDistr", "Version": "1.10.0", @@ -1674,11 +1775,6 @@ "Version": "2.2.0", "SystemRequirements": "C++11" }, - { - "Package": "farver", - "Version": "2.1.1", - "SystemRequirements": "C++11" - }, { "Package": "fasano.franceschini.test", "Version": "2.2.2", @@ -1716,7 +1812,7 @@ }, { "Package": "fastTopics", - "Version": "0.6-163", + "Version": "0.6-192", "SystemRequirements": "GNU make" }, { @@ -1741,14 +1837,9 @@ }, { "Package": "fdaPDE", - "Version": "1.1-17", + "Version": "1.1-19", "SystemRequirements": "GNU make" }, - { - "Package": "fddm", - "Version": "0.5-2", - "SystemRequirements": "C++11" - }, { "Package": "feather", "Version": "0.3.5", @@ -1786,7 +1877,7 @@ }, { "Package": "findInFiles", - "Version": "0.4.0", + "Version": "0.5.0", "SystemRequirements": "grep" }, { @@ -1829,11 +1920,6 @@ "Version": "0.0.7", "SystemRequirements": "pandoc (>= 2.4) - http://pandoc.org" }, - { - "Package": "FLSSS", - "Version": "9.1.3", - "SystemRequirements": "GNU make" - }, { "Package": "Fluidigm", "Version": "0.2", @@ -1846,12 +1932,12 @@ }, { "Package": "FMAT", - "Version": "2024.3", + "Version": "2024.6", "SystemRequirements": "Python (>= 3.9.0)" }, { "Package": "fmesher", - "Version": "0.1.5", + "Version": "0.1.7", "SystemRequirements": "C++17" }, { @@ -1871,7 +1957,7 @@ }, { "Package": "forsearch", - "Version": "6.0.0", + "Version": "6.2.0", "SystemRequirements": "gmp (>= 4.1)" }, { @@ -1879,6 +1965,11 @@ "Version": "0.2.1", "SystemRequirements": "C++11" }, + { + "Package": "freesurfer", + "Version": "1.6.10", + "SystemRequirements": "FSL, Freesurfer (https://surfer.nmr.mgh.harvard.edu/)" + }, { "Package": "frequency", "Version": "0.4.1", @@ -1891,7 +1982,7 @@ }, { "Package": "fs", - "Version": "1.6.3", + "Version": "1.6.4", "SystemRequirements": "GNU make" }, { @@ -1906,7 +1997,7 @@ }, { "Package": "fslr", - "Version": "2.25.2", + "Version": "2.25.3", "SystemRequirements": "FSL" }, { @@ -1921,7 +2012,7 @@ }, { "Package": "ftExtra", - "Version": "0.6.3", + "Version": "0.6.4", "SystemRequirements": "pandoc (>= 2.0.6) - http://pandoc.org" }, { @@ -1929,11 +2020,6 @@ "Version": "1.0.5", "SystemRequirements": "Python (>= 2.4), difflib, fuzzywuzzy ( >=0.15.0 ), python-Levenshtein ( >=0.12.0 ). Detailed installation instructions for each operating system can be found in the README file." }, - { - "Package": "fwildclusterboot", - "Version": "0.13.0", - "SystemRequirements": "Version Requirements to run the wild bootstrap through Julia - Julia (>= 1.8), WildBootTests.jl (>=0.9). Julia is downloadable via the official Julia website (https://julialang.org/downloads/), WildBootTests.jl via Julia's package manager (https://docs.julialang.org/en/v1/stdlib/Pkg/) or its github repository (https://github.com/droodman/WildBootTests.jl)" - }, { "Package": "fwsim", "Version": "0.3.4", @@ -1951,17 +2037,17 @@ }, { "Package": "gamstransfer", - "Version": "3.0.2", + "Version": "3.0.3", "SystemRequirements": "C++17" }, { "Package": "ganDataModel", - "Version": "1.1.6", + "Version": "1.1.7", "SystemRequirements": "TensorFlow (https://www.tensorflow.org)" }, { "Package": "ganGenerativeData", - "Version": "1.5.7", + "Version": "2.0.2", "SystemRequirements": "TensorFlow (https://www.tensorflow.org)" }, { @@ -1984,11 +2070,6 @@ "Version": "1.2.2", "SystemRequirements": "Windows, Linux, OS X" }, - { - "Package": "gdalBindings", - "Version": "0.1.17", - "SystemRequirements": "GDAL" - }, { "Package": "gdalcubes", "Version": "0.7.0", @@ -1996,8 +2077,8 @@ }, { "Package": "gdalraster", - "Version": "1.10.0", - "SystemRequirements": "GDAL (>= 2.4.0, built against GEOS), PROJ, libxml2" + "Version": "1.11.1", + "SystemRequirements": "GDAL (>= 3.1.0, built against GEOS), PROJ, libxml2" }, { "Package": "gdtools", @@ -2061,7 +2142,7 @@ }, { "Package": "geostan", - "Version": "0.5.4", + "Version": "0.6.2", "SystemRequirements": "GNU make" }, { @@ -2071,7 +2152,7 @@ }, { "Package": "gert", - "Version": "2.0.1", + "Version": "2.1.0", "SystemRequirements": "libgit2 (>= 1.0): libgit2-devel (rpm) or libgit2-dev (deb)" }, { @@ -2121,7 +2202,7 @@ }, { "Package": "ggiraph", - "Version": "0.8.9", + "Version": "0.8.10", "SystemRequirements": "libpng" }, { @@ -2141,12 +2222,12 @@ }, { "Package": "giacR", - "Version": "1.0.0", + "Version": "1.0.1", "SystemRequirements": "Chromium-based browser (Google Chrome, Brave, ...)" }, { "Package": "gibasa", - "Version": "1.1.0", + "Version": "1.1.1", "SystemRequirements": "GNU make, MeCab" }, { @@ -2191,12 +2272,12 @@ }, { "Package": "glmmrBase", - "Version": "0.8.1", + "Version": "0.9.2", "SystemRequirements": "GNU make" }, { "Package": "glmmrOptim", - "Version": "0.3.4", + "Version": "0.3.5", "SystemRequirements": "GNU make" }, { @@ -2221,7 +2302,7 @@ }, { "Package": "gm", - "Version": "1.0.2", + "Version": "2.0.0", "SystemRequirements": "MuseScore - https://musescore.org/" }, { @@ -2256,12 +2337,12 @@ }, { "Package": "GPBayes", - "Version": "0.1.0-5.1", + "Version": "0.1.0-6", "SystemRequirements": "GNU Scientific Library version >= 2.5" }, { "Package": "gpboost", - "Version": "1.4.0", + "Version": "1.5.1.1", "SystemRequirements": "C++17" }, { @@ -2269,6 +2350,11 @@ "Version": "1.2.9", "SystemRequirements": "GPGME: libgpgme-dev (deb), gpgme-devel (rpm) gpgme (brew). On Linux 'haveged' is recommended for generating entropy when using the GPG key generator." }, + { + "Package": "gpuR", + "Version": "2.0.6", + "SystemRequirements": "C++11 (supporting at least std=c++0x), OpenCL shared library (provided by an SDK such as AMD/NVIDIA) and OpenCL headers including the C++ header file (provided by Khronos if not by SDK)" + }, { "Package": "gravmagsubs", "Version": "1.0.1", @@ -2346,7 +2432,7 @@ }, { "Package": "gslnls", - "Version": "1.2.0", + "Version": "1.3.2", "SystemRequirements": "GSL (>= 2.2)" }, { @@ -2354,6 +2440,11 @@ "Version": "1.2.1", "SystemRequirements": "A C++11 compiler." }, + { + "Package": "GUD", + "Version": "1.0.2", + "SystemRequirements": "GNU make" + }, { "Package": "guildai", "Version": "0.0.1", @@ -2391,7 +2482,7 @@ }, { "Package": "happign", - "Version": "0.2.2", + "Version": "0.3.0", "SystemRequirements": "C++11, GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>= 4.8.0), sqlite3" }, { @@ -2401,7 +2492,7 @@ }, { "Package": "hbamr", - "Version": "2.3.0", + "Version": "2.3.1", "SystemRequirements": "GNU make" }, { @@ -2416,7 +2507,7 @@ }, { "Package": "hdf5r", - "Version": "1.3.10", + "Version": "1.3.11", "SystemRequirements": "HDF5 (>= 1.8.13)" }, { @@ -2426,7 +2517,7 @@ }, { "Package": "heck", - "Version": "0.1.0", + "Version": "0.1.1", "SystemRequirements": "Cargo (Rust's package manager), rustc" }, { @@ -2456,7 +2547,7 @@ }, { "Package": "hgwrr", - "Version": "0.3-0", + "Version": "0.4-0", "SystemRequirements": "GNU make" }, { @@ -2499,11 +2590,6 @@ "Version": "1.3.3", "SystemRequirements": "GNU make" }, - { - "Package": "HRM", - "Version": "1.2.1", - "SystemRequirements": "C++11" - }, { "Package": "hSDM", "Version": "1.4.4", @@ -2521,7 +2607,7 @@ }, { "Package": "httpgd", - "Version": "2.0.1", + "Version": "2.0.2", "SystemRequirements": "C++17" }, { @@ -2539,14 +2625,9 @@ "Version": "2.0.2", "SystemRequirements": "GNU make" }, - { - "Package": "HypergeoMat", - "Version": "4.0.2", - "SystemRequirements": "C++17" - }, { "Package": "iai", - "Version": "1.10.0", + "Version": "1.10.1", "SystemRequirements": "Julia (>= 1.0) and Interpretable AI System Image (>= 1.0.0)" }, { @@ -2626,8 +2707,8 @@ }, { "Package": "imager", - "Version": "0.45.8", - "SystemRequirements": "fftw3,libtiff,X11" + "Version": "1.0.2", + "SystemRequirements": "fftw3, libtiff, X11" }, { "Package": "implyr", @@ -2639,11 +2720,6 @@ "Version": "0.5.1", "SystemRequirements": "C++11" }, - { - "Package": "iMRMC", - "Version": "1.2.5", - "SystemRequirements": "Java(>=8)" - }, { "Package": "inca", "Version": "0.0.4", @@ -2654,10 +2730,20 @@ "Version": "1.1.4.4", "SystemRequirements": "GNU make" }, + { + "Package": "informativeSCI", + "Version": "1.0.3", + "SystemRequirements": "Java (>= 5.0)" + }, + { + "Package": "inldata", + "Version": "1.2.3", + "SystemRequirements": "libcurl4-openssl-dev pandoc libarchive-dev libv8-dev (deb)" + }, { "Package": "inlpubs", - "Version": "1.1.1", - "SystemRequirements": "Text mining using n-grams requires Amazon Corretto (https://aws.amazon.com/corretto/)." + "Version": "1.1.3", + "SystemRequirements": "Complete functionality necessitates Amazon Corretto (win), and default-jre, pandoc, libxml2-dev, libpoppler-cpp-dev, libmagick++-dev, optipng, libtesseract-dev, libleptonica-dev, tesseract-ocr-eng (deb)" }, { "Package": "inpdfr", @@ -2681,7 +2767,7 @@ }, { "Package": "inTextSummaryTable", - "Version": "3.3.2", + "Version": "3.3.3", "SystemRequirements": "pandoc (to export an interactive summary table to a file)" }, { @@ -2736,7 +2822,7 @@ }, { "Package": "isotracer", - "Version": "1.1.5", + "Version": "1.1.6", "SystemRequirements": "GNU make" }, { @@ -2746,8 +2832,8 @@ }, { "Package": "jack", - "Version": "5.3.0", - "SystemRequirements": "C++ 17, gmp" + "Version": "6.0.0", + "SystemRequirements": "C++17, gmp, mpfr" }, { "Package": "jackalope", @@ -2756,7 +2842,7 @@ }, { "Package": "jagstargets", - "Version": "1.1.0", + "Version": "1.2.0", "SystemRequirements": "JAGS 4.x.y (https://mcmc-jags.sourceforge.net)" }, { @@ -2766,7 +2852,7 @@ }, { "Package": "jarbes", - "Version": "2.0.0", + "Version": "2.2.1", "SystemRequirements": "JAGS (>= 4.3.0) (see http://mcmc-jags.sourceforge.net)" }, { @@ -2784,9 +2870,14 @@ "Version": "1.9-2", "SystemRequirements": "Java (>= 8)" }, + { + "Package": "jlme", + "Version": "0.1.0", + "SystemRequirements": "Julia (>= 1.8)" + }, { "Package": "jlmerclusterperm", - "Version": "1.1.3", + "Version": "1.1.4", "SystemRequirements": "Julia (>= 1.8)" }, { @@ -2806,8 +2897,8 @@ }, { "Package": "jmvconnect", - "Version": "2.3.13", - "SystemRequirements": "jamovi (>= 1.2.8), C++11" + "Version": "2.5.7", + "SystemRequirements": "jamovi (>= 1.2.8)" }, { "Package": "JointAI", @@ -2861,12 +2952,12 @@ }, { "Package": "kantorovich", - "Version": "3.1.0", + "Version": "3.2.0", "SystemRequirements": "GMP (https://gmplib.org/)" }, { "Package": "kerastuneR", - "Version": "0.1.0.6", + "Version": "0.1.0.7", "SystemRequirements": "TensorFlow >= 2.0 (https://www.tensorflow.org/)" }, { @@ -2876,7 +2967,7 @@ }, { "Package": "keyATM", - "Version": "0.5.1", + "Version": "0.5.2", "SystemRequirements": "C++17" }, { @@ -2896,7 +2987,7 @@ }, { "Package": "knitr", - "Version": "1.46", + "Version": "1.48", "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf)." }, { @@ -2906,7 +2997,7 @@ }, { "Package": "KSgeneral", - "Version": "1.1.3", + "Version": "2.0.0", "SystemRequirements": "fftw3 (>=3.3.4)" }, { @@ -2916,7 +3007,7 @@ }, { "Package": "lamW", - "Version": "2.2.3", + "Version": "2.2.4", "SystemRequirements": "GNU make" }, { @@ -2971,7 +3062,7 @@ }, { "Package": "ldt", - "Version": "0.5.2", + "Version": "0.5.3", "SystemRequirements": "C++17" }, { @@ -2986,7 +3077,7 @@ }, { "Package": "ledger", - "Version": "2.0.9", + "Version": "2.0.11", "SystemRequirements": "ledger (>= 3.1), hledger (>= 1.2), beancount (>= 2.0)" }, { @@ -3016,7 +3107,7 @@ }, { "Package": "libstable4u", - "Version": "1.0.3", + "Version": "1.0.4", "SystemRequirements": "GNU GSL" }, { @@ -3026,7 +3117,7 @@ }, { "Package": "lightgbm", - "Version": "4.3.0", + "Version": "4.4.0", "SystemRequirements": "C++17" }, { @@ -3036,12 +3127,12 @@ }, { "Package": "lincom", - "Version": "1.1", + "Version": "1.2", "SystemRequirements": "MOSEK (>= 6), MOSEK License (>= 6)" }, { "Package": "link2GI", - "Version": "0.5-3", + "Version": "0.6-1", "SystemRequirements": "GNU make" }, { @@ -3081,7 +3172,7 @@ }, { "Package": "locfit", - "Version": "1.5-9.9", + "Version": "1.5-9.10", "SystemRequirements": "USE_C17" }, { @@ -3096,7 +3187,7 @@ }, { "Package": "loo", - "Version": "2.7.0", + "Version": "2.8.0", "SystemRequirements": "pandoc (>= 1.12.3), pandoc-citeproc" }, { @@ -3111,7 +3202,7 @@ }, { "Package": "luajr", - "Version": "0.1.6", + "Version": "0.1.8", "SystemRequirements": "GNU make" }, { @@ -3136,7 +3227,7 @@ }, { "Package": "magick", - "Version": "2.8.3", + "Version": "2.8.4", "SystemRequirements": "ImageMagick++: ImageMagick-c++-devel (rpm) or libmagick++-dev (deb)" }, { @@ -3181,19 +3272,14 @@ }, { "Package": "mapme.biodiversity", - "Version": "0.5.0", - "SystemRequirements": "GDAL (>= 3.0.0), PROJ (>= 4.8.0)" + "Version": "0.8.0", + "SystemRequirements": "GDAL (>= 3.7.0), PROJ (>= 4.8.0)" }, { "Package": "mappoly", "Version": "0.4.1", "SystemRequirements": "GNU make" }, - { - "Package": "mapscanner", - "Version": "0.0.6", - "SystemRequirements": "C++11" - }, { "Package": "mapview", "Version": "2.11.2", @@ -3201,7 +3287,7 @@ }, { "Package": "maq", - "Version": "0.3.1", + "Version": "0.4.0", "SystemRequirements": "GNU make" }, { @@ -3234,6 +3320,11 @@ "Version": "0.1.9", "SystemRequirements": "GNU make" }, + { + "Package": "mauricer", + "Version": "2.5.4", + "SystemRequirements": "BEAST2 (https://www.beast2.org/)" + }, { "Package": "MaxentVariableSelection", "Version": "1.0-3", @@ -3246,7 +3337,7 @@ }, { "Package": "MBNMAdose", - "Version": "0.4.2", + "Version": "0.4.3", "SystemRequirements": "JAGS (>= 4.3.0) (https://mcmc-jags.sourceforge.net/)" }, { @@ -3286,7 +3377,7 @@ }, { "Package": "memoiR", - "Version": "1.2-7", + "Version": "1.2-9", "SystemRequirements": "pandoc" }, { @@ -3299,6 +3390,11 @@ "Version": "0.7", "SystemRequirements": "Tcl/Tk toolkit (X11 Quarts for Mac)" }, + { + "Package": "metajam", + "Version": "0.3.0", + "SystemRequirements": "Mac OSX: redland (>= 1.0.14) ; Linux: librdf0 (>= 1.0.14), librdf0-dev (>= 1.0.14)" + }, { "Package": "metapost", "Version": "1.0-6", @@ -3326,7 +3422,7 @@ }, { "Package": "MFSIS", - "Version": "0.2.0", + "Version": "0.2.1", "SystemRequirements": "Python (>= 3.8.0)" }, { @@ -3376,7 +3472,7 @@ }, { "Package": "minqa", - "Version": "1.2.6", + "Version": "1.2.7", "SystemRequirements": "GNU make" }, { @@ -3384,6 +3480,11 @@ "Version": "0.1.0", "SystemRequirements": "GNU make" }, + { + "Package": "MixAll", + "Version": "1.5.16", + "SystemRequirements": "GNU make" + }, { "Package": "MixSIAR", "Version": "3.1.12", @@ -3399,16 +3500,36 @@ "Version": "1.0.0.1", "SystemRequirements": "TensorFlow (https://www.tensorflow.org), Keras (https://keras.io), TensorFlow Probability (https://www.tensorflow.org/probability)" }, + { + "Package": "mlexperiments", + "Version": "0.0.4", + "SystemRequirements": "Quarto command line tools (https://github.com/quarto-dev/quarto-cli)." + }, + { + "Package": "mllrnrs", + "Version": "0.0.4", + "SystemRequirements": "Quarto command line tools (https://github.com/quarto-dev/quarto-cli)." + }, { "Package": "mlpack", - "Version": "4.3.0.1", - "SystemRequirements": "A C++14 compiler. Version 5 or later of GCC will be fine." + "Version": "4.4.0", + "SystemRequirements": "A C++17 compiler. Version 8 or later of GCC will be fine." }, { "Package": "mlr", - "Version": "2.19.1", + "Version": "2.19.2", "SystemRequirements": "gdal (optional), geos (optional), proj (optional), udunits (optional), gsl (optional), gmp (optional), glu (optional), jags (optional), mpfr (optional), openmpi (optional)" }, + { + "Package": "mlsurvlrnrs", + "Version": "0.0.4", + "SystemRequirements": "Quarto command line tools (https://github.com/quarto-dev/quarto-cli)." + }, + { + "Package": "mlts", + "Version": "1.0.0", + "SystemRequirements": "GNU make" + }, { "Package": "mmcif", "Version": "0.1.1", @@ -3436,7 +3557,7 @@ }, { "Package": "mongolite", - "Version": "2.7.3", + "Version": "2.8.0", "SystemRequirements": "OpenSSL, Cyrus SASL (aka libsasl2)" }, { @@ -3444,11 +3565,6 @@ "Version": "2.1", "SystemRequirements": "GNU GSL" }, - { - "Package": "morse", - "Version": "3.3.2", - "SystemRequirements": "JAGS (>= 4.0.0) (see https://mcmc-jags.sourceforge.io)" - }, { "Package": "motifr", "Version": "1.0.0", @@ -3485,13 +3601,13 @@ "SystemRequirements": "A valid account MUST be registered with Microsoft's Cognitive Services website in order to obtain a (free) API key. Without an API key, this package will not work properly." }, { - "Package": "MUACz", - "Version": "2.1.0", - "SystemRequirements": "GNU make" + "Package": "MSTest", + "Version": "0.1.2", + "SystemRequirements": "C++17" }, { - "Package": "Multiaovbay", - "Version": "0.1.0", + "Package": "MUACz", + "Version": "2.1.0", "SystemRequirements": "GNU make" }, { @@ -3506,7 +3622,7 @@ }, { "Package": "multinma", - "Version": "0.6.1", + "Version": "0.7.1", "SystemRequirements": "GNU make" }, { @@ -3539,11 +3655,6 @@ "Version": "0.4.4", "SystemRequirements": "Java (>= 6.0)" }, - { - "Package": "mwcsr", - "Version": "0.1.8", - "SystemRequirements": "Java (>=8)" - }, { "Package": "myTAI", "Version": "0.9.3", @@ -3556,8 +3667,8 @@ }, { "Package": "nanonext", - "Version": "0.13.5.2", - "SystemRequirements": "'libnng' >= 1.5 and 'libmbedtls' >= 2.5, or 'cmake' to compile NNG and/or Mbed TLS included in package sources" + "Version": "1.1.1", + "SystemRequirements": "'libnng' >= 1.6 and 'libmbedtls' >= 2.5, or 'cmake' and 'xz' to compile NNG and/or Mbed TLS included in package sources" }, { "Package": "narray", @@ -3631,8 +3742,8 @@ }, { "Package": "neuralGAM", - "Version": "1.1.0", - "SystemRequirements": "python (>= 3.8), keras, tensorflow" + "Version": "1.1.1", + "SystemRequirements": "python (>= 3.10), keras, tensorflow" }, { "Package": "neuronorm", @@ -3646,7 +3757,7 @@ }, { "Package": "NGCHM", - "Version": "1.0.2", + "Version": "1.0.3", "SystemRequirements": "Java (>= 11) Git" }, { @@ -3656,7 +3767,7 @@ }, { "Package": "nimble", - "Version": "1.1.0", + "Version": "1.2.0", "SystemRequirements": "GNU make" }, { @@ -3666,7 +3777,7 @@ }, { "Package": "nloptr", - "Version": "2.0.3", + "Version": "2.1.1", "SystemRequirements": "cmake (>= 3.2.0) which is used only on Linux or macOS systems when no system build of nlopt (>= 2.7.0) can be found." }, { @@ -3681,7 +3792,7 @@ }, { "Package": "NNS", - "Version": "10.7", + "Version": "10.8.2", "SystemRequirements": "GNU make" }, { @@ -3731,7 +3842,7 @@ }, { "Package": "odbc", - "Version": "1.4.2", + "Version": "1.5.0", "SystemRequirements": "GNU make, An ODBC3 driver manager and drivers." }, { @@ -3741,7 +3852,7 @@ }, { "Package": "officedown", - "Version": "0.3.1", + "Version": "0.3.3", "SystemRequirements": "pandoc (>= 2.0) - http://pandoc.org" }, { @@ -3776,7 +3887,7 @@ }, { "Package": "opencpu", - "Version": "2.2.11", + "Version": "2.2.12", "SystemRequirements": "pandoc, apparmor (optional)" }, { @@ -3811,7 +3922,7 @@ }, { "Package": "openssl", - "Version": "2.1.1", + "Version": "2.2.0", "SystemRequirements": "OpenSSL >= 1.0.2" }, { @@ -3829,11 +3940,6 @@ "Version": "1.0", "SystemRequirements": "JAGS 4.x.y" }, - { - "Package": "orbweaver", - "Version": "0.0.3", - "SystemRequirements": "Cargo (Rust's package manager), rustc" - }, { "Package": "Orcs", "Version": "1.2.3", @@ -3856,18 +3962,13 @@ }, { "Package": "osqp", - "Version": "0.6.3.2", + "Version": "0.6.3.3", "SystemRequirements": "C++17" }, { "Package": "osrmr", "Version": "0.1.36", - "SystemRequirements": "To use the Localhost of OSRM, you need to build OSRM locally" - }, - { - "Package": "otsad", - "Version": "0.2.0", - "SystemRequirements": "Python (>= 3.0.1); bencode-python3 (1.0.2)" + "SystemRequirements": "To use the Localhost of OSRM, you need to build OSRM locally" }, { "Package": "outbreaker2", @@ -3899,11 +4000,6 @@ "Version": "0.1-6", "SystemRequirements": "pandoc (> 1.12)" }, - { - "Package": "PanelMatch", - "Version": "2.0.1", - "SystemRequirements": "C++11" - }, { "Package": "papaja", "Version": "0.1.2", @@ -3939,6 +4035,11 @@ "Version": "0.2.3", "SystemRequirements": "C++11" }, + { + "Package": "parTimeROC", + "Version": "0.1.0", + "SystemRequirements": "GNU make" + }, { "Package": "parzer", "Version": "0.4.1", @@ -3951,17 +4052,17 @@ }, { "Package": "pathfindR", - "Version": "2.3.1", + "Version": "2.4.1", "SystemRequirements": "Java (>= 8.0)" }, { "Package": "pathling", - "Version": "6.4.2", - "SystemRequirements": "Spark: 3.4.x" + "Version": "7.0.0", + "SystemRequirements": "Spark: 3.5.x" }, { "Package": "patientProfilesVis", - "Version": "2.0.7", + "Version": "2.0.9", "SystemRequirements": "latex, cairo (for report creation)" }, { @@ -3971,7 +4072,7 @@ }, { "Package": "paws.common", - "Version": "0.7.2", + "Version": "0.7.4", "SystemRequirements": "pandoc (>= 1.12.3) - http://pandoc.org" }, { @@ -4026,7 +4127,7 @@ }, { "Package": "PDE", - "Version": "1.4.8", + "Version": "1.4.10", "SystemRequirements": "XPDF (4.02)(https://github.com/erikstricker/PDE/tree/master/inst/examples/bin)" }, { @@ -4044,11 +4145,6 @@ "Version": "1.2.4", "SystemRequirements": "GNU make, C++11" }, - { - "Package": "pedmod", - "Version": "0.2.4", - "SystemRequirements": "C++17" - }, { "Package": "pedometrics", "Version": "0.12.1", @@ -4056,7 +4152,7 @@ }, { "Package": "pedprobr", - "Version": "0.9.3", + "Version": "0.9.4", "SystemRequirements": "MERLIN (https://csg.sph.umich.edu/abecasis/merlin/) for calculations involving multiple linked markers." }, { @@ -4066,8 +4162,8 @@ }, { "Package": "PenCoxFrail", - "Version": "1.0.1", - "SystemRequirements": "C++11" + "Version": "2.0.0", + "SystemRequirements": "C++" }, { "Package": "PEPBVS", @@ -4081,8 +4177,8 @@ }, { "Package": "pharmr", - "Version": "0.96.0", - "SystemRequirements": "Python (>= 3.9.0)" + "Version": "1.0.1", + "SystemRequirements": "Python (>= 3.10.0)" }, { "Package": "phase1PRMD", @@ -4090,9 +4186,14 @@ "SystemRequirements": "JAGS (http://mcmc-jags.sourceforge.net)" }, { - "Package": "PhViD", - "Version": "1.0.8", - "SystemRequirements": "Tcl/Tk package TkTable." + "Package": "phonfieldwork", + "Version": "0.0.15", + "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org" + }, + { + "Package": "phylopairs", + "Version": "0.1.0", + "SystemRequirements": "GNU make" }, { "Package": "piton", @@ -4101,12 +4202,12 @@ }, { "Package": "pivmet", - "Version": "0.5.0", + "Version": "0.6.0", "SystemRequirements": "pandoc (>= 1.12.3), pandoc-citeproc" }, { "Package": "pkgdown", - "Version": "2.0.8", + "Version": "2.1.0", "SystemRequirements": "pandoc" }, { @@ -4116,7 +4217,7 @@ }, { "Package": "PKI", - "Version": "0.1-12", + "Version": "0.1-14", "SystemRequirements": "OpenSSL library and headers (openssl-dev or similar)" }, { @@ -4171,12 +4272,12 @@ }, { "Package": "pomdp", - "Version": "1.2.1", + "Version": "1.2.3", "SystemRequirements": "C++17" }, { "Package": "pomp", - "Version": "5.7", + "Version": "5.10", "SystemRequirements": "For Windows users, Rtools (see https://cran.r-project.org/bin/windows/Rtools/)." }, { @@ -4206,7 +4307,7 @@ }, { "Package": "precommit", - "Version": "0.4.2", + "Version": "0.4.3", "SystemRequirements": "git" }, { @@ -4246,7 +4347,7 @@ }, { "Package": "processmapR", - "Version": "0.5.3", + "Version": "0.5.4", "SystemRequirements": "C++" }, { @@ -4256,7 +4357,7 @@ }, { "Package": "PROJ", - "Version": "0.4.5", + "Version": "0.5.0", "SystemRequirements": "PROJ (>= 6.3.1)" }, { @@ -4266,7 +4367,7 @@ }, { "Package": "ProjectionBasedClustering", - "Version": "1.2.1", + "Version": "1.2.2", "SystemRequirements": "C++17" }, { @@ -4296,12 +4397,12 @@ }, { "Package": "protr", - "Version": "1.7-0", + "Version": "1.7-2", "SystemRequirements": "ncbi-blast+ (see )" }, { "Package": "prqlr", - "Version": "0.8.0", + "Version": "0.8.1", "SystemRequirements": "Cargo (Rust's package manager), rustc" }, { @@ -4311,14 +4412,9 @@ }, { "Package": "psborrow2", - "Version": "0.0.3.3", + "Version": "0.0.3.4", "SystemRequirements": "cmdstan" }, - { - "Package": "pseudorank", - "Version": "1.0.1", - "SystemRequirements": "C++11" - }, { "Package": "psqn", "Version": "0.3.1", @@ -4371,7 +4467,7 @@ }, { "Package": "qgisprocess", - "Version": "0.3.0", + "Version": "0.4.0", "SystemRequirements": "'QGIS' latest or long-term release currently supported according to the 'QGIS' release schedule (). Older 'QGIS' releases are not officially supported, but may work since 'QGIS' 3.16." }, { @@ -4386,8 +4482,8 @@ }, { "Package": "qspray", - "Version": "2.1.1", - "SystemRequirements": "C++ 17, gmp, mpfr" + "Version": "3.0.0", + "SystemRequirements": "C++17, gmp" }, { "Package": "quantdr", @@ -4401,8 +4497,8 @@ }, { "Package": "quarto", - "Version": "1.4", - "SystemRequirements": "Quarto command line tools (https://github.com/quarto-dev/quarto-cli)." + "Version": "1.4.4", + "SystemRequirements": "Quarto command line tool ()." }, { "Package": "questionr", @@ -4411,14 +4507,9 @@ }, { "Package": "QuickJSR", - "Version": "1.1.3", + "Version": "1.3.1", "SystemRequirements": "GNU make" }, - { - "Package": "QWDAP", - "Version": "1.1.17", - "SystemRequirements": "C++11" - }, { "Package": "r.blip", "Version": "1.1", @@ -4431,7 +4522,7 @@ }, { "Package": "R2jags", - "Version": "0.7-1.1", + "Version": "0.8-5", "SystemRequirements": "JAGS (http://mcmc-jags.sourceforge.net)" }, { @@ -4476,7 +4567,7 @@ }, { "Package": "ragg", - "Version": "1.3.0", + "Version": "1.3.2", "SystemRequirements": "freetype2, libpng, libtiff, libjpeg" }, { @@ -4501,8 +4592,8 @@ }, { "Package": "RAQSAPI", - "Version": "2.0.3", - "SystemRequirements": "package manual requires pandoc (>= 1.14) http://pandoc.org" + "Version": "2.0.5", + "SystemRequirements": "package manual and Vignettes require pandoc (>= 1.14) http://pandoc.org)" }, { "Package": "rasciidoc", @@ -4519,6 +4610,16 @@ "Version": "1.0.0", "SystemRequirements": "C++ 17, gmp" }, + { + "Package": "ratioOfQsprays", + "Version": "1.0.0", + "SystemRequirements": "C++17, gmp, mpfr" + }, + { + "Package": "ravetools", + "Version": "0.1.7", + "SystemRequirements": "fftw3 (libfftw3-dev (deb), or fftw-devel (rpm)), pkg-config" + }, { "Package": "rayrender", "Version": "0.32.2", @@ -4526,7 +4627,7 @@ }, { "Package": "rayvertex", - "Version": "0.10.4", + "Version": "0.11.4", "SystemRequirements": "C++17" }, { @@ -4691,7 +4792,7 @@ }, { "Package": "RcppParallel", - "Version": "5.1.7", + "Version": "5.1.8", "SystemRequirements": "GNU make, Intel TBB, Windows: cmd.exe and cscript.exe, Solaris: g++ is required" }, { @@ -4701,7 +4802,7 @@ }, { "Package": "RcppSimdJson", - "Version": "0.1.11", + "Version": "0.1.12", "SystemRequirements": "A C++17 compiler is required" }, { @@ -4711,7 +4812,7 @@ }, { "Package": "RCurl", - "Version": "1.98-1.14", + "Version": "1.98-1.16", "SystemRequirements": "GNU make, libcurl" }, { @@ -4721,7 +4822,7 @@ }, { "Package": "RCzechia", - "Version": "1.12.0", + "Version": "1.12.2", "SystemRequirements": "GDAL (>= 2.2.3), GEOS (>= 3.6.2), PROJ (>= 4.9.3)" }, { @@ -4761,7 +4862,7 @@ }, { "Package": "REBayes", - "Version": "2.54", + "Version": "2.56", "SystemRequirements": "MOSEK (http://www.mosek.com) and MOSEK license." }, { @@ -4831,12 +4932,17 @@ }, { "Package": "reprex", + "Version": "2.1.1", + "SystemRequirements": "pandoc (>= 2.0) - https://pandoc.org/" + }, + { + "Package": "reproducible", "Version": "2.1.0", - "SystemRequirements": "pandoc (>= 2.0) - http://pandoc.org" + "SystemRequirements": "'unrar' (Linux/macOS) or '7-Zip' (Windows) to work with '.rar' files." }, { "Package": "reproj", - "Version": "0.4.3", + "Version": "0.7.0", "SystemRequirements": "PROJ (>= 4.4.6)" }, { @@ -4846,7 +4952,7 @@ }, { "Package": "reservr", - "Version": "0.0.2", + "Version": "0.0.3", "SystemRequirements": "GNU make" }, { @@ -4854,14 +4960,9 @@ "Version": "1.0.6", "SystemRequirements": "Java (>= 11.0.12)" }, - { - "Package": "RestRserve", - "Version": "1.2.1", - "SystemRequirements": "C++11" - }, { "Package": "reticulate", - "Version": "1.35.0", + "Version": "1.38.0", "SystemRequirements": "Python (>= 2.7.0)" }, { @@ -4891,7 +4992,7 @@ }, { "Package": "rflsgen", - "Version": "1.2.1", + "Version": "1.2.2", "SystemRequirements": "Java (>= 8)" }, { @@ -4931,7 +5032,7 @@ }, { "Package": "rgrass", - "Version": "0.4-2", + "Version": "0.4-3", "SystemRequirements": "GRASS (>= 7)" }, { @@ -4986,12 +5087,12 @@ }, { "Package": "rjdqa", - "Version": "0.1.4", + "Version": "0.1.5", "SystemRequirements": "Java (>= 8)" }, { "Package": "RJSDMX", - "Version": "3.1-0", + "Version": "3.3-0", "SystemRequirements": "Java (>= 8)" }, { @@ -5016,7 +5117,7 @@ }, { "Package": "Rlgt", - "Version": "0.2-1", + "Version": "0.2-2", "SystemRequirements": "GNU make" }, { @@ -5036,7 +5137,7 @@ }, { "Package": "RMariaDB", - "Version": "1.3.1", + "Version": "1.3.2", "SystemRequirements": "libmariadb-client-lgpl-dev or libmariadb-dev or libmysqlclient-dev, with libssl-dev (deb), mariadb-connector-c-devel or mariadb-devel (rpm), mariadb-connector-c or mysql-connector-c (brew)" }, { @@ -5046,7 +5147,7 @@ }, { "Package": "rmarkdown", - "Version": "2.26", + "Version": "2.27", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org" }, { @@ -5116,12 +5217,12 @@ }, { "Package": "rmsb", - "Version": "1.1-0", + "Version": "1.1-1", "SystemRequirements": "GNU make" }, { "Package": "rmumps", - "Version": "5.2.1-29", + "Version": "5.2.1-30", "SystemRequirements": "GNU Make" }, { @@ -5151,7 +5252,7 @@ }, { "Package": "rnndescent", - "Version": "0.1.4", + "Version": "0.1.6", "SystemRequirements": "C++17" }, { @@ -5176,8 +5277,8 @@ }, { "Package": "rodeo", - "Version": "0.7.8", - "SystemRequirements": "The tools to run 'R CMD SHLIB' on 'Fortran' code. The used 'Fortran' compiler must support pointer initialization which is a feature of the 2008 standard. The compiler from Oracle Developer Studio 12.6 on Solaris 10 currently does not meet this requirement." + "Version": "0.8.2", + "SystemRequirements": "The tools to run 'R CMD SHLIB' on 'Fortran' code. The used 'Fortran' compiler must support pointer initialization which is a feature of the 2008 standard." }, { "Package": "rofanova", @@ -5201,7 +5302,7 @@ }, { "Package": "rolog", - "Version": "0.9.16", + "Version": "0.9.18", "SystemRequirements": "GNU Make, swi-prolog" }, { @@ -5251,7 +5352,7 @@ }, { "Package": "RPostgres", - "Version": "1.4.6", + "Version": "1.4.7", "SystemRequirements": "libpq >= 9.0: libpq-dev (deb) or postgresql-devel (rpm)" }, { @@ -5276,7 +5377,7 @@ }, { "Package": "RQuantLib", - "Version": "0.4.21", + "Version": "0.4.23", "SystemRequirements": "QuantLib library (>= 1.14) from https://quantlib.org, Boost library from https://www.boost.org" }, { @@ -5301,7 +5402,7 @@ }, { "Package": "rsgeo", - "Version": "0.1.6", + "Version": "0.1.7", "SystemRequirements": "Cargo (Rust's package manager), rustc" }, { @@ -5316,7 +5417,7 @@ }, { "Package": "Rsmlx", - "Version": "2023.1.5", + "Version": "2024.1.0", "SystemRequirements": "'Monolix' ()" }, { @@ -5341,7 +5442,7 @@ }, { "Package": "RsSimulx", - "Version": "2023.1", + "Version": "2024.1", "SystemRequirements": "'Simulx' ()" }, { @@ -5381,7 +5482,7 @@ }, { "Package": "rswipl", - "Version": "9.3.3.1", + "Version": "9.3.7.2", "SystemRequirements": "GNU make, CMake (>= 3.10), pandoc, libarchive, libregex, libexpat, liblzma, libzstd, liblz4, libz2, libz, libbcrypt" }, { @@ -5421,7 +5522,7 @@ }, { "Package": "rtkore", - "Version": "1.6.10", + "Version": "1.6.12", "SystemRequirements": "GNU make" }, { @@ -5441,7 +5542,12 @@ }, { "Package": "rts2", - "Version": "0.7.4", + "Version": "0.7.5", + "SystemRequirements": "GNU make" + }, + { + "Package": "Rtwobitlib", + "Version": "0.3.6", "SystemRequirements": "GNU make" }, { @@ -5464,6 +5570,11 @@ "Version": "1.4.2", "SystemRequirements": "Java (>= 8)" }, + { + "Package": "rvisidata", + "Version": "1.0.0", + "SystemRequirements": "visidata (>= 1.0)" + }, { "Package": "RWeka", "Version": "0.4-46", @@ -5496,12 +5607,12 @@ }, { "Package": "rzmq", - "Version": "0.9.12", + "Version": "0.9.13", "SystemRequirements": "ZeroMQ >= 3.0.0: libzmq3-dev (deb) or zeromq-devel (rpm)" }, { "Package": "s2", - "Version": "1.1.6", + "Version": "1.1.7", "SystemRequirements": "OpenSSL >= 1.0.1" }, { @@ -5510,9 +5621,9 @@ "SystemRequirements": "cdo" }, { - "Package": "s2dverification", - "Version": "2.10.3", - "SystemRequirements": "cdo" + "Package": "sacRebleu", + "Version": "0.1.3", + "SystemRequirements": "Rust tool chain w/ cargo, libclang/llvm-config" }, { "Package": "saeHB", @@ -5556,7 +5667,7 @@ }, { "Package": "sarsop", - "Version": "0.6.14", + "Version": "0.6.15", "SystemRequirements": "mallinfo, hence Linux, MacOS or Windows" }, { @@ -5626,7 +5737,7 @@ }, { "Package": "sdmTMB", - "Version": "0.5.0", + "Version": "0.6.0", "SystemRequirements": "GNU make" }, { @@ -5636,12 +5747,12 @@ }, { "Package": "secr", - "Version": "4.6.6", + "Version": "4.6.9", "SystemRequirements": "GNU make" }, { "Package": "secsse", - "Version": "3.0.2", + "Version": "3.1.0", "SystemRequirements": "C++17" }, { @@ -5686,9 +5797,14 @@ }, { "Package": "seqtrie", - "Version": "0.2.6", + "Version": "0.2.8", "SystemRequirements": "GNU make" }, + { + "Package": "sequoia", + "Version": "2.11.2", + "SystemRequirements": "Fortran95" + }, { "Package": "sf", "Version": "1.0-16", @@ -5706,7 +5822,7 @@ }, { "Package": "sharx", - "Version": "1.0-5", + "Version": "1.0-6", "SystemRequirements": "jags (>= 1.0.3)" }, { @@ -5726,12 +5842,12 @@ }, { "Package": "shinyloadtest", - "Version": "1.1.0", + "Version": "1.2.0", "SystemRequirements": "pandoc (>= 2.2) - http://pandoc.org" }, { "Package": "shinytest", - "Version": "1.5.4", + "Version": "1.6.1", "SystemRequirements": "PhantomJS (http://phantomjs.org/)" }, { @@ -5759,14 +5875,9 @@ "Version": "0.2.1", "SystemRequirements": "RStudio" }, - { - "Package": "SimilaR", - "Version": "1.0.8", - "SystemRequirements": "C++11" - }, { "Package": "SimInf", - "Version": "9.6.0", + "Version": "9.8.1", "SystemRequirements": "GNU Scientific Library (GSL)" }, { @@ -5829,6 +5940,11 @@ "Version": "0.1.2", "SystemRequirements": "Cargo (Rust's package manager), rustc" }, + { + "Package": "smile", + "Version": "1.0.5", + "SystemRequirements": "GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>= 4.8.0)" + }, { "Package": "SMITIDvisu", "Version": "0.0.9", @@ -5861,12 +5977,12 @@ }, { "Package": "spacefillr", - "Version": "0.3.2", + "Version": "0.3.3", "SystemRequirements": "C++17" }, { "Package": "spaMM", - "Version": "4.4.16", + "Version": "4.5.0", "SystemRequirements": "GNU Scientific Library (GSL)" }, { @@ -5876,8 +5992,8 @@ }, { "Package": "sparklyr", - "Version": "1.8.5", - "SystemRequirements": "Spark: 1.6.x, 2.x, or 3.x" + "Version": "1.8.6", + "SystemRequirements": "Spark: 2.x, or 3.x" }, { "Package": "sparklyr.flint", @@ -5931,7 +6047,7 @@ }, { "Package": "SpatialDDLS", - "Version": "1.0.1", + "Version": "1.0.2", "SystemRequirements": "Python (>= 2.7.0), TensorFlow (https://www.tensorflow.org/)" }, { @@ -5956,7 +6072,7 @@ }, { "Package": "spatPomp", - "Version": "0.34.2", + "Version": "0.35.0", "SystemRequirements": "For Windows users, Rtools (see https://cran.r-project.org/bin/windows/Rtools/)." }, { @@ -5964,6 +6080,11 @@ "Version": "0.2.2", "SystemRequirements": "GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>= 4.8.0), sqlite3" }, + { + "Package": "spbal", + "Version": "1.0.0", + "SystemRequirements": "C++17" + }, { "Package": "spcosa", "Version": "0.4-2", @@ -5989,6 +6110,11 @@ "Version": "1.2.0", "SystemRequirements": "C++ 17, gmp, mpfr" }, + { + "Package": "spNetwork", + "Version": "0.4.4.3", + "SystemRequirements": "C++17" + }, { "Package": "spongecake", "Version": "0.1.2", @@ -6006,7 +6132,7 @@ }, { "Package": "SqlRender", - "Version": "1.17.0", + "Version": "1.18.0", "SystemRequirements": "Java (>= 8)" }, { @@ -6024,9 +6150,14 @@ "Version": "1.1.6", "SystemRequirements": "GNU make" }, + { + "Package": "sstvars", + "Version": "1.0.1", + "SystemRequirements": "BLAS, LAPACK" + }, { "Package": "StanHeaders", - "Version": "2.32.6", + "Version": "2.32.10", "SystemRequirements": "GNU make, pandoc" }, { @@ -6056,12 +6187,12 @@ }, { "Package": "statgenGxE", - "Version": "1.0.7", + "Version": "1.0.8", "SystemRequirements": "pdflatex" }, { "Package": "statgenSTA", - "Version": "1.0.12", + "Version": "1.0.13", "SystemRequirements": "pdflatex" }, { @@ -6096,7 +6227,7 @@ }, { "Package": "stplanr", - "Version": "1.1.2", + "Version": "1.2.1", "SystemRequirements": "GNU make" }, { @@ -6106,7 +6237,7 @@ }, { "Package": "strawr", - "Version": "0.0.91", + "Version": "0.0.92", "SystemRequirements": "libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb)" }, { @@ -6116,12 +6247,12 @@ }, { "Package": "streamMOA", - "Version": "1.3-0", + "Version": "1.3-1", "SystemRequirements": "Java (>= 8)" }, { "Package": "stressor", - "Version": "0.1.0", + "Version": "0.2.0", "SystemRequirements": "python(>=3.8.10)" }, { @@ -6131,8 +6262,8 @@ }, { "Package": "string2path", - "Version": "0.1.6", - "SystemRequirements": "Cargo (rustc package manager)" + "Version": "0.1.7", + "SystemRequirements": "Cargo (Rust's package manager), rustc" }, { "Package": "stringfish", @@ -6141,7 +6272,7 @@ }, { "Package": "stringi", - "Version": "1.8.3", + "Version": "1.8.4", "SystemRequirements": "ICU4C (>= 61, optional)" }, { @@ -6155,9 +6286,9 @@ "SystemRequirements": "Python (>= 2.7.0)" }, { - "Package": "supc", - "Version": "0.2.6.2", - "SystemRequirements": "C++11" + "Package": "sundialr", + "Version": "0.1.4.2", + "SystemRequirements": "GNU make" }, { "Package": "SuperGauss", @@ -6166,7 +6297,7 @@ }, { "Package": "surveil", - "Version": "0.2.2", + "Version": "0.3.0", "SystemRequirements": "GNU make" }, { @@ -6224,6 +6355,11 @@ "Version": "2.0.0", "SystemRequirements": "gmp (>= 4.2.3)" }, + { + "Package": "symbolicQspray", + "Version": "1.0.0", + "SystemRequirements": "C++17, gmp, mpfr" + }, { "Package": "symengine", "Version": "0.2.6", @@ -6231,7 +6367,7 @@ }, { "Package": "symSEM", - "Version": "0.2", + "Version": "0.4", "SystemRequirements": "Python (>= 3.6.0)" }, { @@ -6241,19 +6377,24 @@ }, { "Package": "systemfonts", - "Version": "1.0.6", + "Version": "1.1.0", "SystemRequirements": "fontconfig, freetype2" }, { "Package": "tables", - "Version": "0.9.17", + "Version": "0.9.28", "SystemRequirements": "pandoc (>= 1.12.3) for vignettes" }, { "Package": "tabr", - "Version": "0.4.9", + "Version": "0.5.0", "SystemRequirements": "LilyPond v2.22.1-2+ (needed for rendering sheet music or writing MIDI files)" }, + { + "Package": "tabulapdf", + "Version": "1.0.5-3", + "SystemRequirements": "Java (>= 7.0): openjdk-11-jdk (deb), java-11-openjdk.x86_64 (rpm), openjdk@11 (brew)" + }, { "Package": "tabulate", "Version": "0.1.0", @@ -6281,7 +6422,7 @@ }, { "Package": "TCIU", - "Version": "1.2.5", + "Version": "1.2.6", "SystemRequirements": "GNU make" }, { @@ -6316,12 +6457,12 @@ }, { "Package": "tensorflow", - "Version": "2.15.0", + "Version": "2.16.0", "SystemRequirements": "TensorFlow (https://www.tensorflow.org/)" }, { "Package": "terra", - "Version": "1.7-71", + "Version": "1.7-78", "SystemRequirements": "C++17, GDAL (>= 2.2.3), GEOS (>= 3.4.0), PROJ (>= 4.9.3), sqlite3" }, { @@ -6346,12 +6487,12 @@ }, { "Package": "texreg", - "Version": "1.39.3", + "Version": "1.39.4", "SystemRequirements": "pandoc (>= 1.12.3) suggested for using wordreg function; LaTeX packages tikz, booktabs, dcolumn, rotating, thumbpdf, longtable, paralist for the vignette" }, { "Package": "text", - "Version": "1.2.0", + "Version": "1.2.1", "SystemRequirements": "Python (>= 3.6.0)" }, { @@ -6366,7 +6507,7 @@ }, { "Package": "textshaping", - "Version": "0.3.7", + "Version": "0.4.0", "SystemRequirements": "freetype2, harfbuzz, fribidi" }, { @@ -6386,7 +6527,7 @@ }, { "Package": "tfdatasets", - "Version": "2.9.0", + "Version": "2.17.0", "SystemRequirements": "TensorFlow >= 1.4 (https://www.tensorflow.org/)" }, { @@ -6396,7 +6537,7 @@ }, { "Package": "tfevents", - "Version": "0.0.2", + "Version": "0.0.4", "SystemRequirements": "libprotobuf, protobuf-compiler" }, { @@ -6421,7 +6562,7 @@ }, { "Package": "tglkmeans", - "Version": "0.5.4", + "Version": "0.5.5", "SystemRequirements": "GNU make" }, { @@ -6431,7 +6572,7 @@ }, { "Package": "thurstonianIRT", - "Version": "0.12.4", + "Version": "0.12.5", "SystemRequirements": "GNU make" }, { @@ -6461,8 +6602,8 @@ }, { "Package": "tiledb", - "Version": "0.25.0", - "SystemRequirements": "A C++17 compiler is required, and for macOS compilation version 11.0 or later is required. Optionally cmake (only when TileDB source build selected), curl (only when TileDB source build selected)), and git (only when TileDB source build selected); on x86_64 and M1 platforms pre-built TileDB Embedded libraries are available at GitHub and are used if no TileDB installation is detected, and no other option to build or download was specified by the user." + "Version": "0.28.0", + "SystemRequirements": "A C++17 compiler is required; on macOS compilation version 11.0 or later is required. Optionally cmake (only when TileDB source build selected), curl (only when TileDB source build selected)), and git (only when TileDB source build selected); on x86_64 and M1 platforms pre-built TileDB Embedded libraries are available at GitHub and are used if no TileDB installation is detected, and no other option to build or download was specified by the user." }, { "Package": "tiler", @@ -6474,6 +6615,11 @@ "Version": "0.3.0", "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo) as well as a recent-enough C++11 compiler (such as g++-4.8 or later). On Windows the zoneinfo included with R is used." }, + { + "Package": "timeless", + "Version": "0.2.3", + "SystemRequirements": "Cargo (Rust's package manager), rustc" + }, { "Package": "tipitaka", "Version": "0.1.2", @@ -6481,7 +6627,7 @@ }, { "Package": "tipsae", - "Version": "1.0.0", + "Version": "1.0.1", "SystemRequirements": "GNU make" }, { @@ -6506,7 +6652,7 @@ }, { "Package": "tok", - "Version": "0.1.1", + "Version": "0.1.3", "SystemRequirements": "Rust tool chain w/ cargo, libclang/llvm-config" }, { @@ -6531,7 +6677,7 @@ }, { "Package": "torch", - "Version": "0.12.0", + "Version": "0.13.0", "SystemRequirements": "LibTorch (https://pytorch.org/); Only x86_64 platforms are currently supported except for ARM system running macOS." }, { @@ -6541,7 +6687,7 @@ }, { "Package": "trackdem", - "Version": "0.6", + "Version": "0.7.2", "SystemRequirements": "Python (>=2.7), Libav, ExifTool" }, { @@ -6561,12 +6707,12 @@ }, { "Package": "TreeSearch", - "Version": "1.5.0", + "Version": "1.5.1", "SystemRequirements": "C++17" }, { "Package": "TreeTools", - "Version": "1.10.0", + "Version": "1.11.1", "SystemRequirements": "C++17" }, { @@ -6586,7 +6732,7 @@ }, { "Package": "triptych", - "Version": "0.1.2", + "Version": "0.1.3", "SystemRequirements": "C++20" }, { @@ -6614,9 +6760,14 @@ "Version": "0.1.0", "SystemRequirements": "GNU make" }, + { + "Package": "tth", + "Version": "4.16-0", + "SystemRequirements": "USE_C17" + }, { "Package": "uavRmp", - "Version": "0.6.2", + "Version": "0.7", "SystemRequirements": "GNU make" }, { @@ -6641,7 +6792,7 @@ }, { "Package": "unigd", - "Version": "0.1.1", + "Version": "0.1.2", "SystemRequirements": "libpng, cairo, freetype2, fontconfig" }, { @@ -6656,7 +6807,7 @@ }, { "Package": "unix", - "Version": "1.5.7", + "Version": "1.5.8", "SystemRequirements": "POSIX.1-2001, AppArmor (optional)" }, { @@ -6689,11 +6840,6 @@ "Version": "4.4.2", "SystemRequirements": "V8 engine version 6+ is needed for ES6 and WASM support. On Linux you can build against libv8-dev (Debian) or v8-devel (Fedora). We also provide static libv8 binaries for most platforms, see the README for details." }, - { - "Package": "VAJointSurv", - "Version": "0.1.0", - "SystemRequirements": "C++17" - }, { "Package": "valection", "Version": "1.0.0", @@ -6701,7 +6847,7 @@ }, { "Package": "vapour", - "Version": "0.9.5", + "Version": "0.10.0", "SystemRequirements": "libgdal-dev, GDAL (>= 2.2.3), PROJ (>= 4.8.0)" }, { @@ -6721,7 +6867,7 @@ }, { "Package": "vcfppR", - "Version": "0.4.5", + "Version": "0.4.6", "SystemRequirements": "libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb), GNU make." }, { @@ -6739,6 +6885,11 @@ "Version": "1.1-4", "SystemRequirements": "Java 1.5 or higher" }, + { + "Package": "VertexWiseR", + "Version": "1.0.0", + "SystemRequirements": "Miniconda3 (>= 23.10.0); BrainStat (reticulate installation, >=0.4.2)" + }, { "Package": "VicmapR", "Version": "0.2.3", @@ -6756,7 +6907,7 @@ }, { "Package": "vitae", - "Version": "0.5.4", + "Version": "0.6.0", "SystemRequirements": "pandoc (>= 2.7) - http://pandoc.org" }, { @@ -6771,7 +6922,7 @@ }, { "Package": "vol2birdR", - "Version": "1.0.2", + "Version": "1.0.3", "SystemRequirements": "GNU make, GSL, HDF5, PROJ" }, { @@ -6781,7 +6932,7 @@ }, { "Package": "warbleR", - "Version": "1.1.30", + "Version": "1.1.31", "SystemRequirements": "fftw3, GNU make, sox, Ghostscript, libsndfile, GDAL" }, { @@ -6806,8 +6957,8 @@ }, { "Package": "websocket", - "Version": "1.4.1", - "SystemRequirements": "C++11, GNU make, OpenSSL >= 1.0.2" + "Version": "1.4.2", + "SystemRequirements": "GNU make, OpenSSL >= 1.0.2" }, { "Package": "WeibullR", @@ -6826,9 +6977,14 @@ }, { "Package": "whitebox", - "Version": "2.3.4", + "Version": "2.4.0", "SystemRequirements": "WhiteboxTools (https://github.com/jblindsay/whitebox-tools/releases/latest)" }, + { + "Package": "winputall", + "Version": "1.0.1", + "SystemRequirements": "GNU make" + }, { "Package": "worcs", "Version": "0.1.14", @@ -6836,7 +6992,7 @@ }, { "Package": "wordnet", - "Version": "0.1-16", + "Version": "0.1-17", "SystemRequirements": "Java (>= 5.0); WordNet database files (direct download: ; Debian and Fedora package: wordnet)" }, { @@ -6851,7 +7007,7 @@ }, { "Package": "WriteXLS", - "Version": "6.5.0", + "Version": "6.7.0", "SystemRequirements": "Perl" }, { @@ -6866,7 +7022,7 @@ }, { "Package": "x13binary", - "Version": "1.1.60", + "Version": "1.1.61", "SystemRequirements": "Fortran sources included in `tools/x13as_html` are compiled via `configure`." }, { @@ -6876,12 +7032,17 @@ }, { "Package": "xgboost", - "Version": "1.7.7.1", + "Version": "1.7.8.1", "SystemRequirements": "GNU make, C++17" }, + { + "Package": "xlcharts", + "Version": "0.0.2", + "SystemRequirements": "Python (>= 2.7.0), Conda" + }, { "Package": "XLConnect", - "Version": "1.0.8", + "Version": "1.0.10", "SystemRequirements": "Java (>= 8)" }, { @@ -6891,7 +7052,7 @@ }, { "Package": "XML", - "Version": "3.99-0.16.1", + "Version": "3.99-0.17", "SystemRequirements": "libxml2 (>= 2.6.3)" }, { @@ -6906,17 +7067,12 @@ }, { "Package": "XRJulia", - "Version": "0.9.0", + "Version": "0.9.0.1", "SystemRequirements": "Julia, v 1.0 or later" }, - { - "Package": "xrnet", - "Version": "0.1.7", - "SystemRequirements": "C++11" - }, { "Package": "xslt", - "Version": "1.4.4", + "Version": "1.4.5", "SystemRequirements": "libxslt: libxslt1-dev (deb), libxslt-devel (rpm)" }, { @@ -6946,7 +7102,7 @@ }, { "Package": "zoomerjoin", - "Version": "0.1.4", + "Version": "0.1.5", "SystemRequirements": "Cargo (>= 1.56) (Rust's package manager), rustc" } ] From fab6d0343e191dca066c179ef820d3261c323923 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 10:46:37 +0200 Subject: [PATCH 02/12] trigger action manually --- .github/workflows/ci.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 08969d0..72d08d0 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -2,6 +2,7 @@ on: push: pull_request: workflow_call: + workflow_dispatch: name: CI From 1974c6eda55bb6385e959fb97e94276b27652952 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 11:32:41 +0200 Subject: [PATCH 03/12] test post install commands --- test/test-packages.sh | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/test/test-packages.sh b/test/test-packages.sh index f1641ce..c7e3298 100755 --- a/test/test-packages.sh +++ b/test/test-packages.sh @@ -197,6 +197,11 @@ test_packages() { $test_satisfy "$sat" $version done fi + # Run any post-install commands + post_install_cmds=$(echo "$dep" | jq ".post_install[]?") + jq -c <<< "$post_install_cmds" | while read cmd; do + run_extra_cmd "$cmd" + done done done } From e3d187928adf1fffe562ff6e388ced931476625a Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:06:26 +0200 Subject: [PATCH 04/12] added rule for installing jags on fedora --- rules/jags.json | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/rules/jags.json b/rules/jags.json index c13db5f..911c437 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -13,6 +13,24 @@ "distribution": "debian" } ] + }, + { + "packages": ["jags"], + "pre_install": [ + { "command": "wget -O /tmp/jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, + { "command": "cd /tmp"}, + { "command": "tar -xf jags.tar.gz"}, + { "command": "cd /tmp/JAGS-4.3.2"}, + { "command": "./configure --libdir=/usr/local/lib64"}, + { "command": "make"}, + { "command": "sudo make install"} + ], + "constraints": [ + { + "os": "linux", + "distribution": "fedora" + } + ] } ] } \ No newline at end of file From e69fd895bfab6773ec313dc80fe3b379989bd002 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:14:27 +0200 Subject: [PATCH 05/12] in preinstall, install wget --- rules/jags.json | 1 + 1 file changed, 1 insertion(+) diff --git a/rules/jags.json b/rules/jags.json index 911c437..5033976 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -17,6 +17,7 @@ { "packages": ["jags"], "pre_install": [ + { "command": "apt-get install -y wget"}, { "command": "wget -O /tmp/jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "cd /tmp"}, { "command": "tar -xf jags.tar.gz"}, From d8d40f6d28ce386f2a0322eb76ed14a1cf430792 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:17:00 +0200 Subject: [PATCH 06/12] it's fedora, not debian.... --- rules/jags.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/rules/jags.json b/rules/jags.json index 5033976..c4dadcd 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -17,7 +17,7 @@ { "packages": ["jags"], "pre_install": [ - { "command": "apt-get install -y wget"}, + { "command": "dnf -y wget"}, { "command": "wget -O /tmp/jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "cd /tmp"}, { "command": "tar -xf jags.tar.gz"}, From c53fc69f0900cded12b35fbfebc7c46678389393 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:21:18 +0200 Subject: [PATCH 07/12] ... and we want to install it... --- rules/jags.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/rules/jags.json b/rules/jags.json index c4dadcd..e677974 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -17,7 +17,7 @@ { "packages": ["jags"], "pre_install": [ - { "command": "dnf -y wget"}, + { "command": "dnf -y install wget"}, { "command": "wget -O /tmp/jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "cd /tmp"}, { "command": "tar -xf jags.tar.gz"}, From c3126aa59625a1e545f4f21126cc73cde45b8998 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:25:41 +0200 Subject: [PATCH 08/12] fixed directory structure --- rules/jags.json | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/rules/jags.json b/rules/jags.json index e677974..2882fc2 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -18,10 +18,9 @@ "packages": ["jags"], "pre_install": [ { "command": "dnf -y install wget"}, - { "command": "wget -O /tmp/jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, - { "command": "cd /tmp"}, + { "command": "wget -O jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "tar -xf jags.tar.gz"}, - { "command": "cd /tmp/JAGS-4.3.2"}, + { "command": "cd JAGS-4.3.2"}, { "command": "./configure --libdir=/usr/local/lib64"}, { "command": "make"}, { "command": "sudo make install"} From 4c5e08ee19ac1d2e7b05a0393df2a1e22adfcbdb Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:29:14 +0200 Subject: [PATCH 09/12] fixed ./configure not found error --- rules/jags.json | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/rules/jags.json b/rules/jags.json index 2882fc2..4e164b6 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -20,10 +20,9 @@ { "command": "dnf -y install wget"}, { "command": "wget -O jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "tar -xf jags.tar.gz"}, - { "command": "cd JAGS-4.3.2"}, - { "command": "./configure --libdir=/usr/local/lib64"}, - { "command": "make"}, - { "command": "sudo make install"} + { "command": "cd JAGS-4.3.2 && ./configure --libdir=/usr/local/lib64"}, + { "command": "cd JAGS-4.3.2 && make"}, + { "command": "cd JAGS-4.3.2 && sudo make install"} ], "constraints": [ { From c305c195d304ad1b51ae9dcf7b9e7144f9c1c914 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:35:12 +0200 Subject: [PATCH 10/12] install cmake --- rules/jags.json | 1 + 1 file changed, 1 insertion(+) diff --git a/rules/jags.json b/rules/jags.json index 4e164b6..38bc723 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -18,6 +18,7 @@ "packages": ["jags"], "pre_install": [ { "command": "dnf -y install wget"}, + { "command": "dnf -y install cmake"}, { "command": "wget -O jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "tar -xf jags.tar.gz"}, { "command": "cd JAGS-4.3.2 && ./configure --libdir=/usr/local/lib64"}, From 45d7ec911cede85fae1db1c6abb80eb941a0e903 Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:39:19 +0200 Subject: [PATCH 11/12] maybe gcc? --- rules/jags.json | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/rules/jags.json b/rules/jags.json index 38bc723..9a4bd2b 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -17,8 +17,7 @@ { "packages": ["jags"], "pre_install": [ - { "command": "dnf -y install wget"}, - { "command": "dnf -y install cmake"}, + { "command": "dnf -y install wget gcc gcc-c++ gfortran"}, { "command": "wget -O jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "tar -xf jags.tar.gz"}, { "command": "cd JAGS-4.3.2 && ./configure --libdir=/usr/local/lib64"}, From 4cad9ac385d6cdf162faf270acea1a7d2f6a5b6c Mon Sep 17 00:00:00 2001 From: Matteo Delucchi Date: Thu, 25 Jul 2024 12:42:14 +0200 Subject: [PATCH 12/12] we need also lapack and stuff --- rules/jags.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/rules/jags.json b/rules/jags.json index 9a4bd2b..c83fee8 100644 --- a/rules/jags.json +++ b/rules/jags.json @@ -17,7 +17,7 @@ { "packages": ["jags"], "pre_install": [ - { "command": "dnf -y install wget gcc gcc-c++ gfortran"}, + { "command": "dnf -y install wget gcc gcc-c++ gfortran lapack* blas* atlas*"}, { "command": "wget -O jags.tar.gz https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz/download"}, { "command": "tar -xf jags.tar.gz"}, { "command": "cd JAGS-4.3.2 && ./configure --libdir=/usr/local/lib64"},