.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
# Example code in package build process
*-Ex.R
# Output files from R CMD build
/*.tar.gz
# Output files from R CMD check
/*.Rcheck/
# RStudio files
.Rproj.user/
# produced vignettes
vignettes/*.html
vignettes/*.pdf
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth
# knitr and R markdown default cache directories
/*_cache/
/cache/
# Temporary files created by R markdown
*.utf8.md
*.knit.md
.Rproj.user
beast2.log
beast2.trees
beast2.xml
beast2.xml.state
tests/testthat/*.trees
anthus_aco.trees
anthus_nd2.trees
inst/doc
vignettes/demo_cache/
vignettes/demo_files/
tests/testthat/Rplots.pdf
vignettes/examples_cache/
vignettes/examples_files/
vignettes/*.fas
vignettes/article_cache/
vignettes/article_files/
anthus_aco.log
my_beast2_input.xml
vignettes/tutorial_cache/
vignettes/*.log
vignettes/*.trees
anthus_aco.posterior.*
scripts/build/
*.fasta
test.log
test.trees
anthus_aco.*
*.log
primates.fas
primates.trees
Felinecoronavirus_Envelope_1.trees
/doc/
/Meta/
babette.sif